Atomistry » Cadmium » PDB 1ykq-2eik » 1zww
Atomistry »
  Cadmium »
    PDB 1ykq-2eik »
      1zww »

Cadmium in PDB 1zww: Crystal Structure of Endophilin-A1 Bar Domain

Protein crystallography data

The structure of Crystal Structure of Endophilin-A1 Bar Domain, PDB code: 1zww was solved by W.Weissenhorn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.30
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 40.705, 121.651, 244.026, 90.00, 90.00, 90.00
R / Rfree (%) 24.9 / 28.7

Cadmium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Cadmium atom in the Crystal Structure of Endophilin-A1 Bar Domain (pdb code 1zww). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 11 binding sites of Cadmium where determined in the Crystal Structure of Endophilin-A1 Bar Domain, PDB code: 1zww:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cadmium binding site 1 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 1 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd900

b:57.4
occ:0.66
SG A:CYS108 2.2 51.3 1.0
O B:HOH941 2.4 60.9 1.0
CB A:CYS108 3.2 61.0 1.0
OE1 B:GLU206 4.0 68.2 1.0
CA A:CYS108 4.1 60.4 1.0
CD A:CD903 4.2 62.6 0.8
O B:HOH946 4.6 86.2 1.0
CD B:GLU206 4.6 67.5 1.0
OE2 B:GLU206 4.8 69.1 1.0
O B:LEU205 4.9 48.6 1.0
O B:GLU206 4.9 53.0 1.0
CA B:GLU206 5.0 52.1 1.0
C A:CYS108 5.0 59.8 1.0

Cadmium binding site 2 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 2 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd902

b:24.6
occ:0.59
OE2 A:GLU126 2.2 43.0 1.0
OE1 A:GLU126 2.3 37.1 1.0
OE2 A:GLU123 2.4 41.9 1.0
CD A:GLU126 2.6 37.8 1.0
OE1 A:GLU123 2.7 40.9 1.0
CD A:GLU123 2.8 43.9 1.0
CG A:GLU126 4.1 37.6 1.0
CG A:GLU123 4.3 38.4 1.0

Cadmium binding site 3 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 3 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd903

b:62.6
occ:0.79
SG A:CYS108 2.2 51.3 1.0
CB A:CYS108 3.1 61.0 1.0
N A:CYS108 4.2 62.9 1.0
CD A:CD900 4.2 57.4 0.7
CA A:CYS108 4.2 60.4 1.0
O B:LEU205 4.5 48.6 1.0
O B:HOH941 4.6 60.9 1.0
C A:ASP107 4.7 65.8 1.0
CB B:LEU205 4.8 41.7 1.0

Cadmium binding site 4 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 4 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd906

b:78.4
occ:0.80
NE2 A:HIS147 2.5 52.2 1.0
O A:HOH933 3.0 55.4 1.0
CD2 A:HIS147 3.4 48.0 1.0
CE1 A:HIS147 3.6 53.2 1.0
CG A:MET48 4.5 52.6 1.0
CG A:HIS147 4.6 49.4 1.0
ND1 A:HIS147 4.6 55.8 1.0
OG A:SER44 4.8 51.8 1.0

Cadmium binding site 5 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 5 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd907

b:82.8
occ:0.86
NE2 A:HIS157 2.4 41.5 1.0
CE1 A:HIS157 3.3 41.6 1.0
CD2 A:HIS157 3.4 40.1 1.0
O A:HOH931 3.7 67.3 1.0
ND1 A:HIS157 4.5 48.5 1.0
CG A:HIS157 4.6 43.4 1.0
O A:HOH927 4.8 55.2 1.0
CG2 A:ILE196 5.0 43.6 1.0

Cadmium binding site 6 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 6 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd911

b:52.5
occ:0.66
OE2 A:GLU198 2.2 61.7 1.0
OE1 A:GLU198 2.5 64.3 1.0
CD A:GLU198 2.7 60.7 1.0
O A:HOH918 2.9 73.2 1.0
CG A:GLU198 4.2 55.1 1.0
CE A:LYS194 4.6 20.3 1.0
NZ A:LYS194 4.8 20.3 1.0
CB A:GLU198 4.9 46.2 1.0
CD A:LYS194 5.0 20.3 1.0

Cadmium binding site 7 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 7 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd901

b:35.6
occ:0.64
OE1 B:GLU123 2.3 46.0 1.0
O B:HOH937 2.3 28.3 1.0
OE1 B:GLU126 2.4 48.5 1.0
OE2 B:GLU123 2.5 41.1 1.0
CD B:GLU123 2.7 46.9 1.0
CD B:GLU126 3.5 44.9 1.0
OE2 B:GLU126 3.8 53.6 1.0
CG B:GLU123 4.2 39.5 1.0
CG B:GLU126 4.8 41.0 1.0

Cadmium binding site 8 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 8 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd904

b:30.0
occ:0.62
O A:HOH928 2.2 43.0 1.0
OD2 B:ASP106 2.3 39.7 1.0
SG B:CYS108 2.3 42.0 1.0
O A:HOH921 2.4 41.5 1.0
OD1 B:ASP106 2.8 45.0 1.0
CG B:ASP106 2.9 44.9 1.0
CD B:CD905 3.0 33.5 0.6
CB B:CYS108 3.4 47.3 1.0
O A:LEU205 4.3 39.9 1.0
NZ A:LYS39 4.4 43.4 1.0
CB B:ASP106 4.4 42.6 1.0
N B:CYS108 4.5 51.5 1.0
CA B:CYS108 4.5 48.7 1.0
CB A:LEU205 4.8 44.6 1.0
O A:HOH920 4.9 32.1 1.0
C A:LEU205 4.9 43.7 1.0

Cadmium binding site 9 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 9 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd905

b:33.5
occ:0.61
SG B:CYS108 2.3 42.0 1.0
O A:HOH921 2.8 41.5 1.0
CD B:CD904 3.0 30.0 0.6
CB B:CYS108 3.3 47.3 1.0
O A:HOH928 3.5 43.0 1.0
O A:LEU205 3.8 39.9 1.0
CA A:GLU206 4.0 45.7 1.0
C A:LEU205 4.4 43.7 1.0
CB A:GLU206 4.5 45.5 1.0
N A:GLU206 4.6 44.7 1.0
O A:GLU206 4.7 42.3 1.0
CA B:CYS108 4.7 48.7 1.0
C A:GLU206 4.8 44.4 1.0

Cadmium binding site 10 out of 11 in 1zww

Go back to Cadmium Binding Sites List in 1zww
Cadmium binding site 10 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd909

b:66.0
occ:0.65
NE2 B:HIS147 2.3 56.6 1.0
O B:HOH939 3.0 72.3 1.0
CE1 B:HIS147 3.1 56.9 1.0
CD2 B:HIS147 3.5 53.2 1.0
CG B:MET48 4.3 57.3 1.0
O B:HOH922 4.3 61.8 1.0
ND1 B:HIS147 4.3 53.0 1.0
CG B:HIS147 4.5 50.0 1.0
OG B:SER44 4.7 42.6 1.0

Reference:

W.Weissenhorn, W.Weissenhorn. N/A N/A.
ISSN: ISSN 0022-2836
PubMed: 16023669
DOI: 10.1016/J.JMB.2005.06.013
Page generated: Fri Jul 19 14:41:00 2024

Last articles

Ba in 4I1F
Ba in 4HKR
Ba in 4E95
Ba in 4E7Y
Ba in 4E8S
Ba in 4E8X
Ba in 4AOB
Ba in 4E60
Ba in 4B5R
Ba in 4E4O
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy