Cadmium in PDB 1zww: Crystal Structure of Endophilin-A1 Bar Domain

The structure of Crystal Structure of Endophilin-A1 Bar Domain, PDB code: 1zww was solved by W.Weissenhorn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.30
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	40.705, 121.651, 244.026, 90.00, 90.00, 90.00
R / Rfree (%)	24.9 / 28.7

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Cadmium atom in the Crystal Structure of Endophilin-A1 Bar Domain (pdb code 1zww). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 11 binding sites of Cadmium where determined in the Crystal Structure of Endophilin-A1 Bar Domain, PDB code: 1zww:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cadmium binding site 1 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd900 b:57.4 occ:0.66 SG A:CYS108 2.2 51.3 1.0 O B:HOH941 2.4 60.9 1.0 CB A:CYS108 3.2 61.0 1.0 OE1 B:GLU206 4.0 68.2 1.0 CA A:CYS108 4.1 60.4 1.0 CD A:CD903 4.2 62.6 0.8 O B:HOH946 4.6 86.2 1.0 CD B:GLU206 4.6 67.5 1.0 OE2 B:GLU206 4.8 69.1 1.0 O B:LEU205 4.9 48.6 1.0 O B:GLU206 4.9 53.0 1.0 CA B:GLU206 5.0 52.1 1.0 C A:CYS108 5.0 59.8 1.0

Cadmium binding site 2 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd902 b:24.6 occ:0.59 OE2 A:GLU126 2.2 43.0 1.0 OE1 A:GLU126 2.3 37.1 1.0 OE2 A:GLU123 2.4 41.9 1.0 CD A:GLU126 2.6 37.8 1.0 OE1 A:GLU123 2.7 40.9 1.0 CD A:GLU123 2.8 43.9 1.0 CG A:GLU126 4.1 37.6 1.0 CG A:GLU123 4.3 38.4 1.0

Cadmium binding site 3 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd903 b:62.6 occ:0.79 SG A:CYS108 2.2 51.3 1.0 CB A:CYS108 3.1 61.0 1.0 N A:CYS108 4.2 62.9 1.0 CD A:CD900 4.2 57.4 0.7 CA A:CYS108 4.2 60.4 1.0 O B:LEU205 4.5 48.6 1.0 O B:HOH941 4.6 60.9 1.0 C A:ASP107 4.7 65.8 1.0 CB B:LEU205 4.8 41.7 1.0

Cadmium binding site 4 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd906 b:78.4 occ:0.80 NE2 A:HIS147 2.5 52.2 1.0 O A:HOH933 3.0 55.4 1.0 CD2 A:HIS147 3.4 48.0 1.0 CE1 A:HIS147 3.6 53.2 1.0 CG A:MET48 4.5 52.6 1.0 CG A:HIS147 4.6 49.4 1.0 ND1 A:HIS147 4.6 55.8 1.0 OG A:SER44 4.8 51.8 1.0

Cadmium binding site 5 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd907 b:82.8 occ:0.86 NE2 A:HIS157 2.4 41.5 1.0 CE1 A:HIS157 3.3 41.6 1.0 CD2 A:HIS157 3.4 40.1 1.0 O A:HOH931 3.7 67.3 1.0 ND1 A:HIS157 4.5 48.5 1.0 CG A:HIS157 4.6 43.4 1.0 O A:HOH927 4.8 55.2 1.0 CG2 A:ILE196 5.0 43.6 1.0

Cadmium binding site 6 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd911 b:52.5 occ:0.66 OE2 A:GLU198 2.2 61.7 1.0 OE1 A:GLU198 2.5 64.3 1.0 CD A:GLU198 2.7 60.7 1.0 O A:HOH918 2.9 73.2 1.0 CG A:GLU198 4.2 55.1 1.0 CE A:LYS194 4.6 20.3 1.0 NZ A:LYS194 4.8 20.3 1.0 CB A:GLU198 4.9 46.2 1.0 CD A:LYS194 5.0 20.3 1.0

Cadmium binding site 7 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd901 b:35.6 occ:0.64 OE1 B:GLU123 2.3 46.0 1.0 O B:HOH937 2.3 28.3 1.0 OE1 B:GLU126 2.4 48.5 1.0 OE2 B:GLU123 2.5 41.1 1.0 CD B:GLU123 2.7 46.9 1.0 CD B:GLU126 3.5 44.9 1.0 OE2 B:GLU126 3.8 53.6 1.0 CG B:GLU123 4.2 39.5 1.0 CG B:GLU126 4.8 41.0 1.0

Cadmium binding site 8 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd904 b:30.0 occ:0.62 O A:HOH928 2.2 43.0 1.0 OD2 B:ASP106 2.3 39.7 1.0 SG B:CYS108 2.3 42.0 1.0 O A:HOH921 2.4 41.5 1.0 OD1 B:ASP106 2.8 45.0 1.0 CG B:ASP106 2.9 44.9 1.0 CD B:CD905 3.0 33.5 0.6 CB B:CYS108 3.4 47.3 1.0 O A:LEU205 4.3 39.9 1.0 NZ A:LYS39 4.4 43.4 1.0 CB B:ASP106 4.4 42.6 1.0 N B:CYS108 4.5 51.5 1.0 CA B:CYS108 4.5 48.7 1.0 CB A:LEU205 4.8 44.6 1.0 O A:HOH920 4.9 32.1 1.0 C A:LEU205 4.9 43.7 1.0

Cadmium binding site 9 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd905 b:33.5 occ:0.61 SG B:CYS108 2.3 42.0 1.0 O A:HOH921 2.8 41.5 1.0 CD B:CD904 3.0 30.0 0.6 CB B:CYS108 3.3 47.3 1.0 O A:HOH928 3.5 43.0 1.0 O A:LEU205 3.8 39.9 1.0 CA A:GLU206 4.0 45.7 1.0 C A:LEU205 4.4 43.7 1.0 CB A:GLU206 4.5 45.5 1.0 N A:GLU206 4.6 44.7 1.0 O A:GLU206 4.7 42.3 1.0 CA B:CYS108 4.7 48.7 1.0 C A:GLU206 4.8 44.4 1.0

Cadmium binding site 10 out of 11 in the Crystal Structure of Endophilin-A1 Bar Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of Crystal Structure of Endophilin-A1 Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd909 b:66.0 occ:0.65 NE2 B:HIS147 2.3 56.6 1.0 O B:HOH939 3.0 72.3 1.0 CE1 B:HIS147 3.1 56.9 1.0 CD2 B:HIS147 3.5 53.2 1.0 CG B:MET48 4.3 57.3 1.0 O B:HOH922 4.3 61.8 1.0 ND1 B:HIS147 4.3 53.0 1.0 CG B:HIS147 4.5 50.0 1.0 OG B:SER44 4.7 42.6 1.0

W.Weissenhorn, W.Weissenhorn. N/A N/A.
ISSN: ISSN 0022-2836
PubMed: 16023669
DOI: 10.1016/J.JMB.2005.06.013