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Cadmium in PDB 2bt7: Structure of the C-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac, Cd Crystal Form

Protein crystallography data

The structure of Structure of the C-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac, Cd Crystal Form, PDB code: 2bt7 was solved by P.Guardado Calvo, G.C.Fox, X.L.Hermo Parrado, A.L.Llamas-Saiz, M.J.Vanraaij, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.84 / 2.35
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.075, 73.075, 69.928, 90.00, 90.00, 120.00
R / Rfree (%) 18.3 / 24.3

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Structure of the C-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac, Cd Crystal Form (pdb code 2bt7). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Structure of the C-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac, Cd Crystal Form, PDB code: 2bt7:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 2bt7

Go back to Cadmium Binding Sites List in 2bt7
Cadmium binding site 1 out of 2 in the Structure of the C-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac, Cd Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of the C-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac, Cd Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1328

b:52.2
occ:1.00
ND1 A:HIS158 2.2 56.5 1.0
CE1 A:HIS158 3.2 53.9 1.0
CG A:HIS158 3.3 55.2 1.0
CB A:HIS158 3.6 56.0 1.0
NE2 A:HIS158 4.3 53.2 1.0
CD2 A:HIS158 4.4 51.0 1.0
CA A:HIS158 4.5 55.3 1.0
O A:HOH2002 4.8 46.2 1.0

Cadmium binding site 2 out of 2 in 2bt7

Go back to Cadmium Binding Sites List in 2bt7
Cadmium binding site 2 out of 2 in the Structure of the C-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac, Cd Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of the C-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac, Cd Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1329

b:59.2
occ:0.50
OD1 A:ASP212 2.7 32.1 1.0
OD2 A:ASP212 3.0 26.3 1.0
CG A:ASP212 3.2 30.7 1.0
O A:THR213 3.8 36.7 1.0
O A:HOH2065 3.9 35.1 1.0
O A:ASN236 4.0 37.9 1.0
CB A:ASP212 4.7 31.2 1.0
OG1 A:THR238 4.8 38.4 1.0
ND2 A:ASN236 4.8 53.2 1.0
N A:THR213 4.9 33.9 1.0
C A:THR213 4.9 36.1 1.0

Reference:

P.Guardado Calvo, G.C.Fox, X.L.Hermo Parrado, A.L.Llamas-Saiz, C.Costas, J.Martinez-Costas, J.Benavente, M.J.Van Raaij. Structure of the Carboxy-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac J.Mol.Biol. V. 354 137 2005.
ISSN: ISSN 0022-2836
PubMed: 16236316
DOI: 10.1016/J.JMB.2005.09.034
Page generated: Sun Jan 24 09:43:27 2021

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