Cadmium in PDB 2c1f: The Structure of the Family 11 Xylanase From Neocallimastix Patriciarum

All present enzymatic activity of The Structure of the Family 11 Xylanase From Neocallimastix Patriciarum:
3.2.1.8;

The structure of The Structure of the Family 11 Xylanase From Neocallimastix Patriciarum, PDB code: 2c1f was solved by J.W.Murray, R.J.Lewis, H.J.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	83.05 / 2.10
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	117.336, 117.336, 117.336, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 20.5

The binding sites of Cadmium atom in the The Structure of the Family 11 Xylanase From Neocallimastix Patriciarum (pdb code 2c1f). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the The Structure of the Family 11 Xylanase From Neocallimastix Patriciarum, PDB code: 2c1f:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the The Structure of the Family 11 Xylanase From Neocallimastix Patriciarum


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Structure of the Family 11 Xylanase From Neocallimastix Patriciarum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1220 b:13.9 occ:1.00 OD2 A:ASP17 2.1 14.1 1.0 OD1 A:ASP17 2.6 16.9 1.0 CG A:ASP17 2.7 15.7 1.0 CB A:ASP17 4.2 16.3 1.0 O A:HOH2014 4.3 17.9 1.0 OD1 A:ASN16 4.4 15.9 1.0 CA A:SER38 4.8 20.0 1.0 CB A:SER38 4.9 20.4 1.0 N A:GLY39 5.0 19.1 1.0

Cadmium binding site 2 out of 2 in the The Structure of the Family 11 Xylanase From Neocallimastix Patriciarum


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Structure of the Family 11 Xylanase From Neocallimastix Patriciarum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1221 b:19.2 occ:0.50 O A:HOH2057 2.4 9.8 1.0 OD1 A:ASP71 2.6 15.7 1.0 OD2 A:ASP71 2.7 16.6 1.0 CG A:ASP71 2.9 16.2 1.0 O A:HOH2062 4.1 17.0 1.0 O A:HOH2056 4.3 15.6 1.0 CD A:LYS68 4.4 19.0 1.0 CB A:ASP71 4.4 16.8 1.0 CB A:LYS68 4.5 19.1 1.0 O A:HOH2061 4.7 17.7 1.0 O A:HOH2058 4.9 19.9 1.0

M.Vardakou, C.Dumon, J.W.Murray, P.Christakopoulos, D.P.Weiner, N.Juge, R.J.Lewis, H.J.Gilbert, J.E.Flint. Understanding the Structural Basis For Substrate and Inhibitor Recognition in Eukaryotic GH11 Xylanases. J.Mol.Biol. V. 375 1293 2008.
ISSN: ISSN 0022-2836
PubMed: 18078955
DOI: 10.1016/J.JMB.2007.11.007