Atomistry » Cadmium » PDB 1ykq-2eik » 2cn2
Atomistry »
  Cadmium »
    PDB 1ykq-2eik »
      2cn2 »

Cadmium in PDB 2cn2: Crystal Structures of Clostridium Thermocellum Xyloglucanase

Enzymatic activity of Crystal Structures of Clostridium Thermocellum Xyloglucanase

All present enzymatic activity of Crystal Structures of Clostridium Thermocellum Xyloglucanase:
3.2.1.151;

Protein crystallography data

The structure of Crystal Structures of Clostridium Thermocellum Xyloglucanase, PDB code: 2cn2 was solved by C.Martinez-Fleites, E.J.Taylor, C.I.Guerreiro, J.A.M.Prates, L.M.A.Ferreira, C.M.G.A.Fontes, M.J.Baumann, H.Brumer, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 2.1
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 100.437, 97.941, 199.122, 90.00, 97.62, 90.00
R / Rfree (%) 17.6 / 21

Cadmium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Cadmium atom in the Crystal Structures of Clostridium Thermocellum Xyloglucanase (pdb code 2cn2). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 15 binding sites of Cadmium where determined in the Crystal Structures of Clostridium Thermocellum Xyloglucanase, PDB code: 2cn2:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cadmium binding site 1 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 1 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1761

b:28.3
occ:1.00
OE2 A:GLU416 2.3 21.7 1.0
O A:HOH2151 2.4 22.0 1.0
O A:HOH2090 2.5 17.6 1.0
OD1 A:ASP414 2.5 17.1 1.0
OD2 A:ASP414 2.6 18.5 1.0
O A:ILE55 2.6 15.2 1.0
O A:HOH2012 2.7 16.1 1.0
CG A:ASP414 2.9 17.2 1.0
CD A:GLU416 3.2 22.6 1.0
C A:ILE55 3.8 15.2 1.0
CG A:GLU416 3.8 20.9 1.0
N A:ILE55 3.9 14.2 1.0
OE1 A:GLU416 4.2 24.4 1.0
O A:HOH2210 4.3 15.7 1.0
CB A:ASP414 4.4 17.2 1.0
O A:HOH2011 4.4 13.4 1.0
CA A:ILE55 4.4 15.1 1.0
O A:HOH2166 4.5 38.4 1.0
O A:HOH2211 4.5 19.9 1.0
CE1 A:HIS275 4.5 18.1 1.0
OE2 A:GLU162 4.6 16.4 1.0
N A:VAL56 4.8 15.9 1.0
CG2 A:VAL56 4.8 16.9 1.0
CA A:GLY54 4.9 13.8 1.0
C A:GLY54 4.9 14.0 1.0
ND1 A:HIS275 4.9 17.7 1.0
O A:HOH2013 4.9 24.5 1.0
CB A:ILE55 4.9 15.0 1.0
CA A:VAL56 5.0 16.1 1.0

Cadmium binding site 2 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 2 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1762

b:21.0
occ:1.00
O A:HOH2221 2.3 15.7 1.0
OE2 C:GLU61 2.4 16.7 1.0
OE2 A:GLU451 2.4 18.7 1.0
OE1 A:GLU82 2.4 18.1 1.0
OE2 A:GLU82 2.6 19.9 1.0
O C:HOH2022 2.6 24.5 1.0
OE1 A:GLU451 2.6 19.5 1.0
CD A:GLU451 2.8 18.3 1.0
CD A:GLU82 2.8 18.1 1.0
OE1 C:GLU61 2.9 18.6 1.0
CD C:GLU61 3.0 16.9 1.0
NZ A:LYS453 4.2 14.4 1.0
O A:HOH2226 4.3 14.0 1.0
CG A:GLU451 4.3 17.7 1.0
O C:HOH2024 4.4 39.5 1.0
O C:HOH2025 4.4 24.3 1.0
CG A:GLU82 4.4 17.6 1.0
NH2 C:ARG138 4.5 16.9 1.0
CG C:GLU61 4.5 15.7 1.0
O C:HOH2023 4.5 29.1 1.0
O A:HOH2225 4.5 15.5 1.0
O C:HOH2026 4.5 24.6 1.0
OD2 A:ASP437 4.6 25.0 1.0
O C:HOH2105 4.6 18.5 1.0

Cadmium binding site 3 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 3 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1763

b:80.6
occ:1.00
OD2 A:ASP488 2.6 21.9 1.0
OE1 C:GLU143 2.7 29.5 1.0
CD C:GLU143 3.1 26.8 1.0
OE2 C:GLU143 3.2 29.1 1.0
OD1 A:ASP488 3.2 16.8 1.0
CG A:ASP488 3.3 18.2 1.0
CG C:GLU143 4.2 20.3 1.0
O A:HOH2247 4.3 18.7 1.0
NH2 C:ARG134 4.5 18.6 1.0
NE C:ARG134 4.6 17.6 1.0
CB A:ASP488 4.7 16.7 1.0
CB C:GLU143 4.9 16.6 1.0
O A:HOH2246 4.9 33.1 1.0

Cadmium binding site 4 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 4 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1761

b:20.8
occ:1.00
OE2 B:GLU416 2.4 17.2 1.0
OD2 B:ASP414 2.4 8.8 1.0
O B:HOH2223 2.5 22.5 1.0
O B:ILE55 2.5 10.4 1.0
OD1 B:ASP414 2.5 9.2 1.0
O B:HOH2013 2.6 12.6 1.0
O B:HOH2130 2.6 15.2 1.0
CG B:ASP414 2.8 9.3 1.0
CD B:GLU416 3.3 16.4 1.0
C B:ILE55 3.7 10.6 1.0
CG B:GLU416 3.8 13.0 1.0
N B:ILE55 3.8 9.9 1.0
OE1 B:GLU416 4.3 17.8 1.0
CB B:ASP414 4.3 9.7 1.0
CA B:ILE55 4.3 10.2 1.0
O B:HOH2328 4.4 15.0 1.0
O B:HOH2327 4.4 8.1 1.0
O B:HOH2012 4.5 12.6 1.0
CE1 B:HIS275 4.5 10.1 1.0
OE2 B:GLU162 4.6 11.9 1.0
N B:VAL56 4.7 10.7 1.0
O B:HOH2014 4.8 29.0 1.0
CA B:GLY54 4.8 9.3 1.0
CG2 B:VAL56 4.8 12.1 1.0
C B:GLY54 4.8 9.7 1.0
CB B:ILE55 4.9 10.3 1.0
CA B:VAL56 4.9 11.1 1.0
ND1 B:HIS275 4.9 10.2 1.0

Cadmium binding site 5 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 5 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1762

b:17.2
occ:1.00
O B:HOH2347 2.4 18.7 1.0
OE1 B:GLU82 2.4 13.4 1.0
OE2 B:GLU451 2.4 14.3 1.0
OE2 D:GLU61 2.4 14.1 1.0
O B:HOH2339 2.5 14.1 1.0
OE2 B:GLU82 2.5 14.4 1.0
OE1 B:GLU451 2.7 16.0 1.0
CD B:GLU82 2.8 13.6 1.0
CD B:GLU451 2.9 14.4 1.0
OE1 D:GLU61 3.0 15.4 1.0
CD D:GLU61 3.1 14.6 1.0
NZ B:LYS453 4.1 14.5 1.0
O B:HOH2051 4.3 11.4 1.0
O B:HOH2349 4.3 21.4 1.0
CG B:GLU82 4.3 13.4 1.0
OD2 B:ASP437 4.4 15.0 1.0
O D:HOH2033 4.4 15.8 1.0
CG B:GLU451 4.4 12.6 1.0
NH2 D:ARG138 4.4 12.0 1.0
O D:HOH2031 4.4 14.6 1.0
O D:HOH2030 4.5 26.3 1.0
O D:HOH2113 4.5 16.7 1.0
O B:HOH2350 4.5 12.2 1.0
CG D:GLU61 4.5 13.2 1.0
O B:HOH2052 4.8 29.8 1.0
O B:HOH2348 4.9 23.4 1.0

Cadmium binding site 6 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 6 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1763

b:52.9
occ:1.00
OE2 B:GLU724 2.5 27.1 1.0
OE1 B:GLU724 2.7 26.9 1.0
CD B:GLU724 2.9 26.7 1.0
O B:HOH2520 2.9 24.5 1.0
O B:HOH2524 3.7 37.5 1.0
CG B:GLU724 4.4 24.2 1.0

Cadmium binding site 7 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 7 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd1761

b:22.2
occ:1.00
O C:HOH2123 2.5 18.6 1.0
OD2 C:ASP414 2.5 10.6 1.0
OE2 C:GLU416 2.5 18.2 1.0
OD1 C:ASP414 2.5 13.4 1.0
O C:ILE55 2.6 12.0 1.0
O C:HOH2013 2.6 12.5 1.0
O C:HOH2238 2.7 16.1 1.0
CG C:ASP414 2.8 11.3 1.0
CD C:GLU416 3.4 17.4 1.0
C C:ILE55 3.7 12.2 1.0
CG C:GLU416 3.8 15.0 1.0
N C:ILE55 3.9 11.4 1.0
O C:HOH2325 4.3 14.1 1.0
O C:HOH2323 4.3 8.2 1.0
CB C:ASP414 4.3 11.7 1.0
OE1 C:GLU416 4.4 19.1 1.0
O C:HOH2324 4.4 36.6 1.0
CA C:ILE55 4.4 11.8 1.0
O C:HOH2012 4.5 8.5 1.0
CG2 C:VAL56 4.6 11.7 1.0
CE1 C:HIS275 4.7 14.8 1.0
OE2 C:GLU162 4.7 9.9 1.0
N C:VAL56 4.7 12.3 1.0
CA C:GLY54 4.8 11.1 1.0
C C:GLY54 4.8 10.9 1.0
CB C:ILE55 4.9 12.3 1.0
CA C:VAL56 4.9 12.2 1.0

Cadmium binding site 8 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 8 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd1762

b:64.4
occ:1.00
OE1 C:GLU140 2.6 24.3 1.0
O C:HOH2050 2.7 29.5 1.0
OE2 C:GLU140 3.2 22.8 1.0
CD C:GLU140 3.2 21.9 1.0
O C:HOH2107 3.4 32.4 1.0
O C:HOH2106 4.4 16.4 1.0
O C:HOH2048 4.5 29.0 1.0
CG C:GLU140 4.6 19.1 1.0
CG2 C:ILE85 4.8 11.7 1.0
CA C:GLU140 5.0 15.7 1.0

Cadmium binding site 9 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 9 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd1763

b:69.3
occ:1.00
O C:HOH2505 3.3 31.6 1.0
OE2 C:GLU724 3.3 36.3 1.0
CD C:GLU724 3.6 33.1 1.0
CG C:GLU724 4.0 27.2 1.0
CB C:ASP723 4.0 24.8 1.0
OE1 C:GLU724 4.3 35.1 1.0
N C:ASP723 4.6 23.6 1.0
N C:GLU724 4.7 23.3 1.0
CG C:ASP723 4.7 26.7 1.0
OD2 C:ASP723 4.8 29.7 1.0
CA C:ASP723 4.8 24.1 1.0

Cadmium binding site 10 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 10 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd1764

b:79.2
occ:1.00
OE2 C:GLU378 2.5 33.0 1.0
CD C:GLU378 3.3 31.7 1.0
OE1 C:GLU378 3.5 32.5 1.0
CG C:GLU378 4.6 28.5 1.0

Reference:

C.Martinez-Fleites, C.I.Guerreiro, M.J.Baumann, E.J.Taylor, J.A.M.Prates, L.M.A.Ferreira, C.M.G.A.Fontes, H.Brumer, G.J.Davies. Crystal Structures of Clostridium Thermocellum Xyloglucanase, XGH74A, Reveal the Structural Basis For Xyloglucan Recognition and Degradation. J.Biol.Chem. V. 281 24922 2006.
ISSN: ISSN 0021-9258
PubMed: 16772298
DOI: 10.1074/JBC.M603583200
Page generated: Sat Dec 12 08:16:46 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy