Atomistry » Cadmium » PDB 1ykq-2eik » 2cn2
Atomistry »
  Cadmium »
    PDB 1ykq-2eik »
      2cn2 »

Cadmium in PDB 2cn2: Crystal Structures of Clostridium Thermocellum Xyloglucanase

Enzymatic activity of Crystal Structures of Clostridium Thermocellum Xyloglucanase

All present enzymatic activity of Crystal Structures of Clostridium Thermocellum Xyloglucanase:
3.2.1.151;

Protein crystallography data

The structure of Crystal Structures of Clostridium Thermocellum Xyloglucanase, PDB code: 2cn2 was solved by C.Martinez-Fleites, E.J.Taylor, C.I.Guerreiro, J.A.M.Prates, L.M.A.Ferreira, C.M.G.A.Fontes, M.J.Baumann, H.Brumer, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 2.1
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 100.437, 97.941, 199.122, 90.00, 97.62, 90.00
R / Rfree (%) 17.6 / 21

Cadmium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Cadmium atom in the Crystal Structures of Clostridium Thermocellum Xyloglucanase (pdb code 2cn2). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 15 binding sites of Cadmium where determined in the Crystal Structures of Clostridium Thermocellum Xyloglucanase, PDB code: 2cn2:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cadmium binding site 1 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 1 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1761

b:28.3
occ:1.00
 OE2 A:GLU416 2.3 21.7 1.0
O A:HOH2151 2.4 22.0 1.0
O A:HOH2090 2.5 17.6 1.0
OD1 A:ASP414 2.5 17.1 1.0
OD2 A:ASP414 2.6 18.5 1.0
O A:ILE55 2.6 15.2 1.0
O A:HOH2012 2.7 16.1 1.0
CG A:ASP414 2.9 17.2 1.0
CD A:GLU416 3.2 22.6 1.0
C A:ILE55 3.8 15.2 1.0
CG A:GLU416 3.8 20.9 1.0
N A:ILE55 3.9 14.2 1.0
OE1 A:GLU416 4.2 24.4 1.0
O A:HOH2210 4.3 15.7 1.0
CB A:ASP414 4.4 17.2 1.0
O A:HOH2011 4.4 13.4 1.0
CA A:ILE55 4.4 15.1 1.0
O A:HOH2166 4.5 38.4 1.0
O A:HOH2211 4.5 19.9 1.0
CE1 A:HIS275 4.5 18.1 1.0
OE2 A:GLU162 4.6 16.4 1.0
N A:VAL56 4.8 15.9 1.0
CG2 A:VAL56 4.8 16.9 1.0
CA A:GLY54 4.9 13.8 1.0
C A:GLY54 4.9 14.0 1.0
ND1 A:HIS275 4.9 17.7 1.0
O A:HOH2013 4.9 24.5 1.0
CB A:ILE55 4.9 15.0 1.0
CA A:VAL56 5.0 16.1 1.0

Cadmium binding site 2 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 2 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1762

b:21.0
occ:1.00
 O A:HOH2221 2.3 15.7 1.0
OE2 C:GLU61 2.4 16.7 1.0
OE2 A:GLU451 2.4 18.7 1.0
OE1 A:GLU82 2.4 18.1 1.0
OE2 A:GLU82 2.6 19.9 1.0
O C:HOH2022 2.6 24.5 1.0
OE1 A:GLU451 2.6 19.5 1.0
CD A:GLU451 2.8 18.3 1.0
CD A:GLU82 2.8 18.1 1.0
OE1 C:GLU61 2.9 18.6 1.0
CD C:GLU61 3.0 16.9 1.0
NZ A:LYS453 4.2 14.4 1.0
O A:HOH2226 4.3 14.0 1.0
CG A:GLU451 4.3 17.7 1.0
O C:HOH2024 4.4 39.5 1.0
O C:HOH2025 4.4 24.3 1.0
CG A:GLU82 4.4 17.6 1.0
NH2 C:ARG138 4.5 16.9 1.0
CG C:GLU61 4.5 15.7 1.0
O C:HOH2023 4.5 29.1 1.0
O A:HOH2225 4.5 15.5 1.0
O C:HOH2026 4.5 24.6 1.0
OD2 A:ASP437 4.6 25.0 1.0
O C:HOH2105 4.6 18.5 1.0

Cadmium binding site 3 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 3 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1763

b:80.6
occ:1.00
 OD2 A:ASP488 2.6 21.9 1.0
OE1 C:GLU143 2.7 29.5 1.0
CD C:GLU143 3.1 26.8 1.0
OE2 C:GLU143 3.2 29.1 1.0
OD1 A:ASP488 3.2 16.8 1.0
CG A:ASP488 3.3 18.2 1.0
CG C:GLU143 4.2 20.3 1.0
O A:HOH2247 4.3 18.7 1.0
NH2 C:ARG134 4.5 18.6 1.0
NE C:ARG134 4.6 17.6 1.0
CB A:ASP488 4.7 16.7 1.0
CB C:GLU143 4.9 16.6 1.0
O A:HOH2246 4.9 33.1 1.0

Cadmium binding site 4 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 4 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1761

b:20.8
occ:1.00
 OE2 B:GLU416 2.4 17.2 1.0
OD2 B:ASP414 2.4 8.8 1.0
O B:HOH2223 2.5 22.5 1.0
O B:ILE55 2.5 10.4 1.0
OD1 B:ASP414 2.5 9.2 1.0
O B:HOH2013 2.6 12.6 1.0
O B:HOH2130 2.6 15.2 1.0
CG B:ASP414 2.8 9.3 1.0
CD B:GLU416 3.3 16.4 1.0
C B:ILE55 3.7 10.6 1.0
CG B:GLU416 3.8 13.0 1.0
N B:ILE55 3.8 9.9 1.0
OE1 B:GLU416 4.3 17.8 1.0
CB B:ASP414 4.3 9.7 1.0
CA B:ILE55 4.3 10.2 1.0
O B:HOH2328 4.4 15.0 1.0
O B:HOH2327 4.4 8.1 1.0
O B:HOH2012 4.5 12.6 1.0
CE1 B:HIS275 4.5 10.1 1.0
OE2 B:GLU162 4.6 11.9 1.0
N B:VAL56 4.7 10.7 1.0
O B:HOH2014 4.8 29.0 1.0
CA B:GLY54 4.8 9.3 1.0
CG2 B:VAL56 4.8 12.1 1.0
C B:GLY54 4.8 9.7 1.0
CB B:ILE55 4.9 10.3 1.0
CA B:VAL56 4.9 11.1 1.0
ND1 B:HIS275 4.9 10.2 1.0

Cadmium binding site 5 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 5 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1762

b:17.2
occ:1.00
 O B:HOH2347 2.4 18.7 1.0
OE1 B:GLU82 2.4 13.4 1.0
OE2 B:GLU451 2.4 14.3 1.0
OE2 D:GLU61 2.4 14.1 1.0
O B:HOH2339 2.5 14.1 1.0
OE2 B:GLU82 2.5 14.4 1.0
OE1 B:GLU451 2.7 16.0 1.0
CD B:GLU82 2.8 13.6 1.0
CD B:GLU451 2.9 14.4 1.0
OE1 D:GLU61 3.0 15.4 1.0
CD D:GLU61 3.1 14.6 1.0
NZ B:LYS453 4.1 14.5 1.0
O B:HOH2051 4.3 11.4 1.0
O B:HOH2349 4.3 21.4 1.0
CG B:GLU82 4.3 13.4 1.0
OD2 B:ASP437 4.4 15.0 1.0
O D:HOH2033 4.4 15.8 1.0
CG B:GLU451 4.4 12.6 1.0
NH2 D:ARG138 4.4 12.0 1.0
O D:HOH2031 4.4 14.6 1.0
O D:HOH2030 4.5 26.3 1.0
O D:HOH2113 4.5 16.7 1.0
O B:HOH2350 4.5 12.2 1.0
CG D:GLU61 4.5 13.2 1.0
O B:HOH2052 4.8 29.8 1.0
O B:HOH2348 4.9 23.4 1.0

Cadmium binding site 6 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 6 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1763

b:52.9
occ:1.00
 OE2 B:GLU724 2.5 27.1 1.0
OE1 B:GLU724 2.7 26.9 1.0
CD B:GLU724 2.9 26.7 1.0
O B:HOH2520 2.9 24.5 1.0
O B:HOH2524 3.7 37.5 1.0
CG B:GLU724 4.4 24.2 1.0

Cadmium binding site 7 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 7 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd1761

b:22.2
occ:1.00
 O C:HOH2123 2.5 18.6 1.0
OD2 C:ASP414 2.5 10.6 1.0
OE2 C:GLU416 2.5 18.2 1.0
OD1 C:ASP414 2.5 13.4 1.0
O C:ILE55 2.6 12.0 1.0
O C:HOH2013 2.6 12.5 1.0
O C:HOH2238 2.7 16.1 1.0
CG C:ASP414 2.8 11.3 1.0
CD C:GLU416 3.4 17.4 1.0
C C:ILE55 3.7 12.2 1.0
CG C:GLU416 3.8 15.0 1.0
N C:ILE55 3.9 11.4 1.0
O C:HOH2325 4.3 14.1 1.0
O C:HOH2323 4.3 8.2 1.0
CB C:ASP414 4.3 11.7 1.0
OE1 C:GLU416 4.4 19.1 1.0
O C:HOH2324 4.4 36.6 1.0
CA C:ILE55 4.4 11.8 1.0
O C:HOH2012 4.5 8.5 1.0
CG2 C:VAL56 4.6 11.7 1.0
CE1 C:HIS275 4.7 14.8 1.0
OE2 C:GLU162 4.7 9.9 1.0
N C:VAL56 4.7 12.3 1.0
CA C:GLY54 4.8 11.1 1.0
C C:GLY54 4.8 10.9 1.0
CB C:ILE55 4.9 12.3 1.0
CA C:VAL56 4.9 12.2 1.0

Cadmium binding site 8 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 8 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd1762

b:64.4
occ:1.00
 OE1 C:GLU140 2.6 24.3 1.0
O C:HOH2050 2.7 29.5 1.0
OE2 C:GLU140 3.2 22.8 1.0
CD C:GLU140 3.2 21.9 1.0
O C:HOH2107 3.4 32.4 1.0
O C:HOH2106 4.4 16.4 1.0
O C:HOH2048 4.5 29.0 1.0
CG C:GLU140 4.6 19.1 1.0
CG2 C:ILE85 4.8 11.7 1.0
CA C:GLU140 5.0 15.7 1.0

Cadmium binding site 9 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 9 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd1763

b:69.3
occ:1.00
 O C:HOH2505 3.3 31.6 1.0
OE2 C:GLU724 3.3 36.3 1.0
CD C:GLU724 3.6 33.1 1.0
CG C:GLU724 4.0 27.2 1.0
CB C:ASP723 4.0 24.8 1.0
OE1 C:GLU724 4.3 35.1 1.0
N C:ASP723 4.6 23.6 1.0
N C:GLU724 4.7 23.3 1.0
CG C:ASP723 4.7 26.7 1.0
OD2 C:ASP723 4.8 29.7 1.0
CA C:ASP723 4.8 24.1 1.0

Cadmium binding site 10 out of 15 in 2cn2

Go back to Cadmium Binding Sites List in 2cn2
Cadmium binding site 10 out of 15 in the Crystal Structures of Clostridium Thermocellum Xyloglucanase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of Crystal Structures of Clostridium Thermocellum Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd1764

b:79.2
occ:1.00
 OE2 C:GLU378 2.5 33.0 1.0
CD C:GLU378 3.3 31.7 1.0
OE1 C:GLU378 3.5 32.5 1.0
CG C:GLU378 4.6 28.5 1.0

Reference:

C.Martinez-Fleites, C.I.Guerreiro, M.J.Baumann, E.J.Taylor, J.A.M.Prates, L.M.A.Ferreira, C.M.G.A.Fontes, H.Brumer, G.J.Davies. Crystal Structures of Clostridium Thermocellum Xyloglucanase, XGH74A, Reveal the Structural Basis For Xyloglucan Recognition and Degradation. J.Biol.Chem. V. 281 24922 2006.
ISSN: ISSN 0021-9258
PubMed: 16772298
DOI: 10.1074/JBC.M603583200
Page generated: Fri Jul 19 14:45:32 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy