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Cadmium in PDB 2e76: Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus

Enzymatic activity of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus

All present enzymatic activity of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus:
1.10.99.1;

Protein crystallography data

The structure of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus, PDB code: 2e76 was solved by W.A.Cramer, E.Yamashita, H.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.27 / 3.41
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 157.227, 157.227, 363.295, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 25.6

Other elements in 2e76:

The structure of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Iron (Fe) 6 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus (pdb code 2e76). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus, PDB code: 2e76:

Cadmium binding site 1 out of 1 in 2e76

Go back to Cadmium Binding Sites List in 2e76
Cadmium binding site 1 out of 1 in the Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Cytochrome B6F Complex with Tridecyl- Stigmatellin (Tds) From M.Laminosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd216

b:63.5
occ:1.00
 OE2 A:GLU75 2.1 57.0 1.0
O C:HOH302 2.4 28.1 1.0
NE2 C:HIS143 2.5 73.6 1.0
CD A:GLU75 3.1 59.5 1.0
CD2 C:HIS143 3.2 42.7 1.0
OE1 A:GLU75 3.5 66.5 1.0
CE1 C:HIS143 3.5 56.4 1.0
O A:HOH1105 3.8 79.4 1.0
O A:ASN74 4.2 44.2 1.0
CG A:GLU75 4.4 36.3 1.0
O C:LYS140 4.4 63.0 1.0
CG C:HIS143 4.4 38.8 1.0
ND1 C:HIS143 4.5 26.7 1.0
CE C:LYS140 4.7 91.0 1.0

Reference:

E.Yamashita, H.Zhang, W.A.Cramer. Structure of the Cytochrome B(6)F Complex: Quinone Analogue Inhibitors As Ligands of Heme C(N) J.Mol.Biol. V. 370 39 2007.
ISSN: ISSN 0022-2836
PubMed: 17498743
DOI: 10.1016/J.JMB.2007.04.011
Page generated: Sat Dec 12 08:16:52 2020

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