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Cadmium in PDB 2fj4: Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3)

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3) (pdb code 2fj4). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3), PDB code: 2fj4:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 2fj4

Go back to Cadmium Binding Sites List in 2fj4
Cadmium binding site 1 out of 4 in the Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd69

b:0.0
occ:1.00
SG A:CYS34 2.5 0.0 1.0
SG A:CYS49 2.5 0.0 1.0
SG A:CYS35 2.5 0.0 1.0
SG A:CYS45 2.5 0.0 1.0
HB3 A:CYS45 3.0 0.0 1.0
HA A:CYS49 3.1 0.0 1.0
CB A:CYS45 3.4 0.0 1.0
CB A:CYS49 3.5 0.0 1.0
CB A:CYS34 3.5 0.0 1.0
CB A:CYS35 3.8 0.0 1.0
CA A:CYS49 3.8 0.0 1.0
CD A:CD70 3.8 0.0 1.0
HG22 A:VAL50 4.1 0.0 1.0
O A:CYS34 4.1 0.0 1.0
C A:CYS34 4.1 0.0 1.0
H A:CYS51 4.1 0.0 1.0
SG A:CYS51 4.2 0.0 1.0
CD A:CD71 4.3 0.0 1.0
HB3 A:CYS34 4.3 0.0 1.0
CA A:CYS34 4.4 0.0 1.0
HB3 A:CYS49 4.5 0.0 1.0
HB3 A:CYS35 4.5 0.0 1.0
N A:CYS35 4.5 0.0 1.0
C A:CYS49 4.5 0.0 1.0
HA A:CYS45 4.5 0.0 1.0
CA A:CYS45 4.6 0.0 1.0
CB A:CYS38 4.6 0.0 1.0
H A:CYS34 4.6 0.0 1.0
CA A:CYS35 4.6 0.0 1.0
SG A:CYS38 4.7 0.0 1.0
HB3 A:CYS38 4.7 0.0 1.0
HA A:CYS35 4.7 0.0 1.0
N A:CYS34 4.8 0.0 1.0
CB A:CYS51 4.8 0.0 1.0
O A:CYS49 4.9 0.0 1.0
H A:CYS35 5.0 0.0 1.0

Cadmium binding site 2 out of 4 in 2fj4

Go back to Cadmium Binding Sites List in 2fj4
Cadmium binding site 2 out of 4 in the Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd70

b:0.0
occ:1.00
SG A:CYS35 2.5 0.0 1.0
SG A:CYS38 2.5 0.0 1.0
SG A:CYS51 2.5 0.0 1.0
SG A:CYS37 2.5 0.0 1.0
HB3 A:CYS35 3.1 0.0 1.0
CB A:CYS35 3.4 0.0 1.0
CB A:CYS37 3.5 0.0 1.0
CB A:CYS38 3.5 0.0 1.0
CB A:CYS51 3.7 0.0 1.0
CD A:CD71 3.8 0.0 1.0
CD A:CD72 3.8 0.0 1.0
CD A:CD69 3.8 0.0 1.0
HB3 A:CYS51 3.9 0.0 1.0
SG A:CYS64 4.0 0.0 1.0
HB3 A:CYS64 4.1 0.0 1.0
N A:CYS38 4.1 0.0 1.0
H A:CYS37 4.1 0.0 1.0
C A:CYS37 4.1 0.0 1.0
H A:CYS38 4.1 0.0 1.0
HA A:ALA59 4.2 0.0 1.0
H A:SER36 4.2 0.0 1.0
CA A:CYS37 4.2 0.0 1.0
SG A:CYS45 4.3 0.0 1.0
HB3 A:CYS38 4.3 0.0 1.0
HB3 A:CYS37 4.4 0.0 1.0
N A:CYS37 4.5 0.0 1.0
CA A:CYS38 4.5 0.0 1.0
CB A:CYS64 4.6 0.0 1.0
HG22 A:VAL50 4.6 0.0 1.0
O A:CYS37 4.7 0.0 1.0
HA A:CYS35 4.7 0.0 1.0
CA A:CYS35 4.7 0.0 1.0
H A:CYS51 4.7 0.0 1.0
HG23 A:VAL50 4.7 0.0 1.0
SG A:CYS67 4.9 0.0 1.0

Cadmium binding site 3 out of 4 in 2fj4

Go back to Cadmium Binding Sites List in 2fj4
Cadmium binding site 3 out of 4 in the Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd71

b:0.0
occ:1.00
SG A:CYS38 2.5 0.0 1.0
SG A:CYS42 2.5 0.0 1.0
SG A:CYS67 2.5 0.0 1.0
SG A:CYS45 2.5 0.0 1.0
HB3 A:CYS38 3.0 0.0 1.0
HB3 A:CYS67 3.3 0.0 1.0
HG21 A:VAL50 3.3 0.0 1.0
CB A:CYS38 3.3 0.0 1.0
CB A:CYS67 3.4 0.0 1.0
CB A:CYS45 3.5 0.0 1.0
CB A:CYS42 3.7 0.0 1.0
HG22 A:VAL50 3.7 0.0 1.0
HB3 A:CYS42 3.7 0.0 1.0
HG23 A:VAL50 3.7 0.0 1.0
CG2 A:VAL50 3.8 0.0 1.0
CD A:CD70 3.8 0.0 1.0
CD A:CD72 3.8 0.0 1.0
H A:CYS45 3.9 0.0 1.0
SG A:CYS51 4.0 0.0 1.0
N A:CYS45 4.2 0.0 1.0
CD A:CD69 4.3 0.0 1.0
HB3 A:CYS45 4.3 0.0 1.0
CB A:LYS44 4.4 0.0 1.0
CA A:CYS45 4.4 0.0 1.0
HB3 A:LYS44 4.6 0.0 1.0
HD3 A:LYS44 4.6 0.0 1.0
H A:LYS44 4.6 0.0 1.0
CA A:CYS38 4.7 0.0 1.0
O A:CYS42 4.7 0.0 1.0
HA A:CYS45 4.8 0.0 1.0
HA A:CYS38 4.8 0.0 1.0
CA A:CYS67 4.8 0.0 1.0
SG A:CYS64 4.9 0.0 1.0
C A:LYS44 4.9 0.0 1.0
SG A:CYS35 4.9 0.0 1.0
CA A:CYS42 5.0 0.0 1.0
H A:CYS67 5.0 0.0 1.0

Cadmium binding site 4 out of 4 in 2fj4

Go back to Cadmium Binding Sites List in 2fj4
Cadmium binding site 4 out of 4 in the Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd72

b:0.0
occ:1.00
HG23 A:VAL50 2.3 0.0 1.0
SG A:CYS64 2.5 0.0 1.0
SG A:CYS51 2.5 0.0 1.0
SG A:CYS67 2.5 0.0 1.0
SG A:CYS66 2.5 0.0 1.0
H A:CYS67 2.6 0.0 1.0
CG2 A:VAL50 3.3 0.0 1.0
CB A:CYS67 3.5 0.0 1.0
N A:CYS67 3.5 0.0 1.0
H A:CYS66 3.5 0.0 1.0
HG22 A:VAL50 3.7 0.0 1.0
CB A:CYS64 3.7 0.0 1.0
CB A:CYS66 3.8 0.0 1.0
HG21 A:VAL50 3.8 0.0 1.0
CD A:CD70 3.8 0.0 1.0
CD A:CD71 3.8 0.0 1.0
CB A:CYS51 3.9 0.0 1.0
HB A:VAL50 4.0 0.0 1.0
HB3 A:CYS64 4.1 0.0 1.0
CA A:CYS67 4.1 0.0 1.0
SG A:CYS38 4.2 0.0 1.0
N A:CYS66 4.2 0.0 1.0
HB3 A:CYS51 4.2 0.0 1.0
CA A:CYS66 4.3 0.0 1.0
CB A:VAL50 4.3 0.0 1.0
HB3 A:CYS67 4.4 0.0 1.0
C A:CYS66 4.4 0.0 1.0
H A:CYS51 4.4 0.0 1.0
HA A:CYS51 4.4 0.0 1.0
HG11 A:VAL50 4.4 0.0 1.0
N A:CYS51 4.5 0.0 1.0
CA A:CYS51 4.5 0.0 1.0
HB3 A:CYS66 4.7 0.0 1.0
HA A:CYS67 4.7 0.0 1.0
H A:SER65 4.8 0.0 1.0
CA A:CYS64 4.9 0.0 1.0
C A:CYS64 4.9 0.0 1.0
N A:SER65 4.9 0.0 1.0
SG A:CYS45 4.9 0.0 1.0
SG A:CYS37 5.0 0.0 1.0

Reference:

H.Wu, Q.Zhang. Solution Structure of A-Domain of Human Metallothionein-3 (Mt-3) To Be Published.
Page generated: Sat Dec 12 08:17:08 2020

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