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Cadmium in PDB 2j6e: Crystal Structure of An Autoimmune Complex Between A Human Igm Rheumatoid Factor and IGG1 Fc Reveals A Novel Fc Epitope and Evidence For Affinity Maturation

Protein crystallography data

The structure of Crystal Structure of An Autoimmune Complex Between A Human Igm Rheumatoid Factor and IGG1 Fc Reveals A Novel Fc Epitope and Evidence For Affinity Maturation, PDB code: 2j6e was solved by S.Duquerroy, E.A.Stura, S.Bressanelli, H.Browne, D.Beale, M.Hamon, P.Casali, M.C.Vaney, F.A.Rey, B.J.Sutton, M.J.Taussig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 3.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 241.980, 75.610, 102.400, 90.00, 91.13, 90.00
R / Rfree (%) 22.3 / 28.8

Other elements in 2j6e:

The structure of Crystal Structure of An Autoimmune Complex Between A Human Igm Rheumatoid Factor and IGG1 Fc Reveals A Novel Fc Epitope and Evidence For Affinity Maturation also contains other interesting chemical elements:

Arsenic (As) 1 atom
Zinc (Zn) 2 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of An Autoimmune Complex Between A Human Igm Rheumatoid Factor and IGG1 Fc Reveals A Novel Fc Epitope and Evidence For Affinity Maturation (pdb code 2j6e). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of An Autoimmune Complex Between A Human Igm Rheumatoid Factor and IGG1 Fc Reveals A Novel Fc Epitope and Evidence For Affinity Maturation, PDB code: 2j6e:

Cadmium binding site 1 out of 1 in 2j6e

Go back to Cadmium Binding Sites List in 2j6e
Cadmium binding site 1 out of 1 in the Crystal Structure of An Autoimmune Complex Between A Human Igm Rheumatoid Factor and IGG1 Fc Reveals A Novel Fc Epitope and Evidence For Affinity Maturation


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of An Autoimmune Complex Between A Human Igm Rheumatoid Factor and IGG1 Fc Reveals A Novel Fc Epitope and Evidence For Affinity Maturation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1445

b:57.7
occ:1.00
NE2 A:HIS310 2.0 44.5 1.0
NE2 A:HIS435 2.3 41.1 1.0
CE1 A:HIS310 2.9 45.1 1.0
CD2 A:HIS310 3.1 43.3 1.0
CE1 A:HIS435 3.2 40.8 1.0
CD2 A:HIS435 3.3 38.9 1.0
CD1 A:LEU314 3.7 28.5 1.0
ND1 A:HIS310 4.1 43.8 1.0
CG A:HIS310 4.2 41.3 1.0
ND1 A:HIS435 4.3 39.5 1.0
CG A:HIS435 4.4 38.0 1.0

Reference:

S.Duquerroy, E.A.Stura, S.Bressanelli, S.M.Fabiane, M.C.Vaney, D.Beale, M.Hamon, P.Casali, F.A.Rey, B.J.Sutton, M.J.Taussig. Crystal Structure of A Human Autoimmune Complex Between Igm Rheumatoid Factor RF61 and IGG1 Fc Reveals A Novel Epitope and Evidence For Affinity Maturation. J.Mol.Biol. V. 368 1321 2007.
ISSN: ISSN 0022-2836
PubMed: 17395205
DOI: 10.1016/J.JMB.2007.02.085
Page generated: Sat Dec 12 08:17:20 2020

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