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Cadmium in PDB 2lk6: uc(Nmr) Determination of the Global Structure of the Cd-113 Derivative of Desulforedoxin

Cadmium Binding Sites:

The binding sites of Cadmium atom in the uc(Nmr) Determination of the Global Structure of the Cd-113 Derivative of Desulforedoxin (pdb code 2lk6). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the uc(Nmr) Determination of the Global Structure of the Cd-113 Derivative of Desulforedoxin, PDB code: 2lk6:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 2lk6

Go back to Cadmium Binding Sites List in 2lk6
Cadmium binding site 1 out of 2 in the uc(Nmr) Determination of the Global Structure of the Cd-113 Derivative of Desulforedoxin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of uc(Nmr) Determination of the Global Structure of the Cd-113 Derivative of Desulforedoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd37

b:0.0
occ:1.00
SG A:CYS12 2.4 0.0 1.0
SG A:CYS29 2.4 0.0 1.0
SG A:CYS28 2.5 0.0 1.0
SG A:CYS9 2.6 0.0 1.0
HA3 B:GLY24 2.9 0.0 1.0
H A:CYS12 3.0 0.0 1.0
HB2 A:CYS29 3.1 0.0 1.0
HB3 A:CYS28 3.3 0.0 1.0
CB A:CYS29 3.3 0.0 1.0
HB3 A:CYS12 3.4 0.0 1.0
CB A:CYS28 3.4 0.0 1.0
HB3 A:CYS9 3.5 0.0 1.0
CB A:CYS12 3.5 0.0 1.0
CB A:CYS9 3.6 0.0 1.0
HB2 A:CYS9 3.6 0.0 1.0
N A:CYS29 3.7 0.0 1.0
C A:CYS28 3.7 0.0 1.0
HB3 A:LEU11 3.7 0.0 1.0
HB2 A:LEU11 3.8 0.0 1.0
N A:CYS12 3.8 0.0 1.0
CA B:GLY24 3.9 0.0 1.0
H A:CYS29 3.9 0.0 1.0
O A:CYS28 4.0 0.0 1.0
CA A:CYS29 4.1 0.0 1.0
CA A:CYS28 4.1 0.0 1.0
H A:GLY13 4.2 0.0 1.0
N B:GLY24 4.2 0.0 1.0
HB3 A:CYS29 4.2 0.0 1.0
H B:GLY23 4.2 0.0 1.0
CB A:LEU11 4.3 0.0 1.0
CA A:CYS12 4.3 0.0 1.0
HB3 A:GLN14 4.3 0.0 1.0
HB2 A:CYS28 4.4 0.0 1.0
H A:GLN14 4.4 0.0 1.0
HB2 A:CYS12 4.4 0.0 1.0
HA A:CYS29 4.5 0.0 1.0
H B:GLY24 4.5 0.0 1.0
HA2 B:GLY24 4.5 0.0 1.0
H A:LEU11 4.5 0.0 1.0
HE21 A:GLN14 4.6 0.0 1.0
H B:THR25 4.6 0.0 1.0
C B:GLY23 4.6 0.0 1.0
HA A:CYS28 4.6 0.0 1.0
O B:GLY23 4.7 0.0 1.0
C B:GLY24 4.7 0.0 1.0
HD11 A:LEU11 4.8 0.0 1.0
HB2 A:GLN14 4.9 0.0 1.0
C A:LEU11 4.9 0.0 1.0
N B:THR25 4.9 0.0 1.0
N A:GLY13 5.0 0.0 1.0
CA A:LEU11 5.0 0.0 1.0

Cadmium binding site 2 out of 2 in 2lk6

Go back to Cadmium Binding Sites List in 2lk6
Cadmium binding site 2 out of 2 in the uc(Nmr) Determination of the Global Structure of the Cd-113 Derivative of Desulforedoxin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of uc(Nmr) Determination of the Global Structure of the Cd-113 Derivative of Desulforedoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd37

b:0.0
occ:1.00
SG B:CYS12 2.4 0.0 1.0
SG B:CYS29 2.5 0.0 1.0
SG B:CYS28 2.5 0.0 1.0
SG B:CYS9 2.6 0.0 1.0
HA3 A:GLY24 2.7 0.0 1.0
H B:CYS12 3.0 0.0 1.0
HB2 B:CYS29 3.1 0.0 1.0
HB3 B:CYS28 3.2 0.0 1.0
CB B:CYS29 3.3 0.0 1.0
CB B:CYS28 3.4 0.0 1.0
HB3 B:CYS12 3.5 0.0 1.0
HB3 B:CYS9 3.5 0.0 1.0
CB B:CYS9 3.6 0.0 1.0
HB2 B:CYS9 3.6 0.0 1.0
CB B:CYS12 3.6 0.0 1.0
HB2 B:LEU11 3.6 0.0 1.0
N B:CYS29 3.6 0.0 1.0
C B:CYS28 3.7 0.0 1.0
CA A:GLY24 3.8 0.0 1.0
H B:CYS29 3.8 0.0 1.0
N B:CYS12 3.9 0.0 1.0
HB3 B:LEU11 4.0 0.0 1.0
CA B:CYS29 4.0 0.0 1.0
O B:CYS28 4.0 0.0 1.0
CA B:CYS28 4.1 0.0 1.0
HA2 A:GLY24 4.2 0.0 1.0
H B:GLY13 4.2 0.0 1.0
HB3 B:GLN14 4.3 0.0 1.0
HB3 B:CYS29 4.3 0.0 1.0
HB2 B:CYS28 4.3 0.0 1.0
CB B:LEU11 4.3 0.0 1.0
H A:THR25 4.4 0.0 1.0
H B:GLN14 4.4 0.0 1.0
CA B:CYS12 4.4 0.0 1.0
HA B:CYS29 4.4 0.0 1.0
N A:GLY24 4.5 0.0 1.0
HB2 B:CYS12 4.5 0.0 1.0
HA B:CYS28 4.5 0.0 1.0
H B:LEU11 4.5 0.0 1.0
HE21 B:GLN14 4.5 0.0 1.0
O A:GLY23 4.6 0.0 1.0
C A:GLY24 4.7 0.0 1.0
HB2 B:GLN14 4.8 0.0 1.0
C A:GLY23 4.8 0.0 1.0
N A:THR25 4.8 0.0 1.0
HE3 B:MET33 4.8 0.0 1.0
HE2 B:MET33 4.9 0.0 1.0
C B:LEU11 4.9 0.0 1.0
N B:GLY13 5.0 0.0 1.0
H A:GLY24 5.0 0.0 1.0

Reference:

B.J.Goodfellow, F.Rusnak, I.Moura, T.Domke, J.J.Moura. uc(Nmr) Determination of the Global Structure of the 113CD Derivative of Desulforedoxin: Investigation of the Hydrogen Bonding Pattern at the Metal Center. Protein Sci. V. 7 928 1998.
ISSN: ISSN 0961-8368
PubMed: 9568899
DOI: 10.1002/PRO.5560070410
Page generated: Thu Jul 10 11:56:04 2025

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