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Cadmium in PDB 2mfp: Solution Structure of the Circular G-Domain Analog From the Wheat Metallothionein Ec-1

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Solution Structure of the Circular G-Domain Analog From the Wheat Metallothionein Ec-1 (pdb code 2mfp). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Solution Structure of the Circular G-Domain Analog From the Wheat Metallothionein Ec-1, PDB code: 2mfp:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 2mfp

Go back to Cadmium Binding Sites List in 2mfp
Cadmium binding site 1 out of 2 in the Solution Structure of the Circular G-Domain Analog From the Wheat Metallothionein Ec-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of the Circular G-Domain Analog From the Wheat Metallothionein Ec-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd100

b:43.1
occ:1.00
SG A:CYS9 2.5 14.2 1.0
SG A:CYS13 2.6 32.2 1.0
SG A:CYS3 2.6 44.2 1.0
SG A:CYS19 2.6 25.4 1.0
CD A:CD101 2.7 33.2 1.0
HA A:CYS19 2.8 20.3 1.0
HB3 A:CYS9 3.1 31.4 1.0
HB3 A:CYS3 3.3 63.0 1.0
CB A:CYS9 3.4 44.1 1.0
CB A:CYS3 3.5 51.0 1.0
CB A:CYS19 3.5 71.3 1.0
CA A:CYS19 3.6 64.4 1.0
HB3 A:CYS13 3.6 44.4 1.0
CB A:CYS13 3.6 65.4 1.0
HB2 A:CYS19 3.6 54.4 1.0
HB2 A:CYS21 3.7 22.2 1.0
HB2 A:CYS3 3.7 20.5 1.0
HB2 A:CYS9 3.7 53.2 1.0
HB2 A:CYS13 3.8 2.1 1.0
C A:CYS19 4.3 1.5 1.0
O A:GLY18 4.3 74.4 1.0
H A:ARG20 4.4 20.6 1.0
SG A:CYS21 4.4 61.3 1.0
O A:GLY31 4.4 63.4 1.0
N A:ARG20 4.5 54.4 1.0
HB3 A:CYS19 4.5 71.0 1.0
CB A:CYS21 4.5 70.4 1.0
N A:CYS19 4.6 40.3 1.0
H A:ALA10 4.7 23.3 1.0
CA A:CYS9 4.8 44.5 1.0
H A:CYS21 4.8 24.2 1.0
CA A:CYS3 4.8 20.4 1.0
N A:CYS21 4.9 74.2 1.0
H A:GLY15 4.9 61.2 1.0
HA A:CYS9 4.9 73.0 1.0
C A:GLY18 4.9 71.4 1.0
HA A:CYS3 5.0 4.2 1.0
HA2 A:GLY15 5.0 61.3 1.0

Cadmium binding site 2 out of 2 in 2mfp

Go back to Cadmium Binding Sites List in 2mfp
Cadmium binding site 2 out of 2 in the Solution Structure of the Circular G-Domain Analog From the Wheat Metallothionein Ec-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of the Circular G-Domain Analog From the Wheat Metallothionein Ec-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:33.2
occ:1.00
O A:GLY31 2.4 63.4 1.0
SG A:CYS7 2.5 21.4 1.0
SG A:CYS9 2.5 14.2 1.0
SG A:CYS3 2.6 44.2 1.0
SG A:CYS21 2.7 61.3 1.0
CD A:CD100 2.7 43.1 1.0
HB3 A:CYS3 3.3 63.0 1.0
HB2 A:CYS9 3.4 53.2 1.0
HB3 A:CYS7 3.5 2.3 1.0
CB A:CYS3 3.5 51.0 1.0
C A:GLY31 3.6 73.3 1.0
CB A:CYS9 3.6 44.1 1.0
HB2 A:CYS21 3.6 22.2 1.0
HA3 A:GLY31 3.7 43.0 1.0
CB A:CYS7 3.7 33.1 1.0
HA A:CYS3 3.8 4.2 1.0
CB A:CYS21 3.8 70.4 1.0
HB3 A:CYS9 4.0 31.4 1.0
HA2 A:GLY28 4.1 23.2 1.0
CA A:GLY31 4.2 11.1 1.0
HA A:CYS21 4.2 44.5 1.0
HB2 A:CYS7 4.2 12.1 1.0
CA A:CYS3 4.2 20.4 1.0
SG A:CYS19 4.4 25.4 1.0
HB2 A:CYS3 4.4 20.5 1.0
CA A:CYS21 4.5 33.2 1.0
O A:ARG20 4.5 44.2 1.0
O A:GLY27 4.5 10.3 1.0
O A:CYS7 4.6 13.1 1.0
O A:GLY2 4.6 45.4 1.0
HA A:ALA1 4.6 75.4 1.0
HB3 A:CYS21 4.7 71.5 1.0
N A:ALA1 4.7 41.2 1.0
HA2 A:GLY31 4.7 22.3 1.0
N A:CYS21 4.7 74.2 1.0
N A:CYS3 4.9 60.2 1.0
O A:ALA1 4.9 42.2 1.0
CA A:CYS9 4.9 44.5 1.0
HA A:CYS19 4.9 20.3 1.0
C A:ARG20 4.9 53.1 1.0
CA A:CYS7 4.9 72.2 1.0
H A:CYS9 4.9 20.2 1.0
C A:GLY2 5.0 42.3 1.0
C A:ALA1 5.0 2.3 1.0
C A:CYS7 5.0 42.2 1.0

Reference:

K.Tarasava, S.Johannsen, E.Freisinger. Solution Structure of the Circular Gamma-Domain Analog From the Wheat Metallothionein Ec-1. Molecules V. 18 14414 2013.
ISSN: ESSN 1420-3049
PubMed: 24284492
DOI: 10.3390/MOLECULES181114414
Page generated: Sat Dec 12 08:17:30 2020

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