Cadmium in PDB 2mhu: The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy
Cadmium Binding Sites:
The binding sites of Cadmium atom in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy
(pdb code 2mhu). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the
The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy, PDB code: 2mhu:
Jump to Cadmium binding site number:
1;
2;
3;
Cadmium binding site 1 out
of 3 in 2mhu
Go back to
Cadmium Binding Sites List in 2mhu
Cadmium binding site 1 out
of 3 in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cd102
b:1.0
occ:1.00
|
SG
|
A:CYS15
|
2.4
|
1.2
|
1.0
|
SG
|
A:CYS19
|
2.6
|
1.4
|
1.0
|
SG
|
A:CYS29
|
2.6
|
1.9
|
1.0
|
SG
|
A:CYS24
|
2.6
|
0.8
|
1.0
|
HB2
|
A:CYS19
|
3.0
|
2.0
|
1.0
|
HB3
|
A:CYS15
|
3.0
|
1.8
|
1.0
|
HB3
|
A:CYS29
|
3.1
|
2.7
|
1.0
|
HB2
|
A:CYS24
|
3.3
|
0.5
|
1.0
|
CB
|
A:CYS15
|
3.3
|
1.5
|
1.0
|
CB
|
A:CYS24
|
3.4
|
0.6
|
1.0
|
CB
|
A:CYS29
|
3.4
|
2.0
|
1.0
|
CB
|
A:CYS19
|
3.4
|
1.4
|
1.0
|
HB3
|
A:CYS24
|
3.4
|
0.8
|
1.0
|
HB2
|
A:CYS26
|
3.5
|
3.9
|
1.0
|
HB3
|
A:CYS21
|
3.5
|
1.2
|
1.0
|
HB2
|
A:CYS29
|
3.7
|
2.8
|
1.0
|
HA
|
A:CYS19
|
4.0
|
1.2
|
1.0
|
HB2
|
A:CYS15
|
4.0
|
1.9
|
1.0
|
CD
|
A:CD103
|
4.1
|
1.3
|
1.0
|
HB3
|
A:CYS19
|
4.2
|
1.8
|
1.0
|
HA
|
A:CYS15
|
4.3
|
1.6
|
1.0
|
CA
|
A:CYS19
|
4.3
|
0.8
|
1.0
|
HB2
|
A:CYS21
|
4.4
|
1.1
|
1.0
|
O
|
A:CYS29
|
4.4
|
2.2
|
1.0
|
CB
|
A:CYS21
|
4.4
|
0.9
|
1.0
|
CA
|
A:CYS15
|
4.5
|
1.4
|
1.0
|
CD
|
A:CD104
|
4.5
|
0.9
|
1.0
|
CB
|
A:CYS26
|
4.6
|
2.5
|
1.0
|
CA
|
A:CYS29
|
4.8
|
2.2
|
1.0
|
H
|
A:CYS26
|
4.8
|
1.2
|
1.0
|
HB3
|
A:CYS26
|
4.8
|
3.8
|
1.0
|
H
|
A:CYS21
|
4.8
|
1.2
|
1.0
|
CA
|
A:CYS24
|
4.8
|
0.6
|
1.0
|
|
Cadmium binding site 2 out
of 3 in 2mhu
Go back to
Cadmium Binding Sites List in 2mhu
Cadmium binding site 2 out
of 3 in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cd103
b:1.3
occ:1.00
|
SG
|
A:CYS15
|
2.6
|
1.2
|
1.0
|
SG
|
A:CYS13
|
2.6
|
2.2
|
1.0
|
SG
|
A:CYS26
|
2.6
|
1.3
|
1.0
|
HB3
|
A:CYS7
|
2.7
|
3.1
|
1.0
|
SG
|
A:CYS7
|
2.8
|
1.2
|
1.0
|
HB2
|
A:CYS15
|
3.0
|
1.9
|
1.0
|
HB2
|
A:CYS13
|
3.2
|
2.0
|
1.0
|
CB
|
A:CYS7
|
3.2
|
2.1
|
1.0
|
HB2
|
A:CYS26
|
3.2
|
3.9
|
1.0
|
CB
|
A:CYS15
|
3.3
|
1.5
|
1.0
|
CB
|
A:CYS13
|
3.4
|
1.4
|
1.0
|
CB
|
A:CYS26
|
3.4
|
2.5
|
1.0
|
HA
|
A:CYS13
|
3.4
|
2.6
|
1.0
|
HB2
|
A:CYS7
|
3.5
|
2.8
|
1.0
|
H
|
A:CYS15
|
3.6
|
1.1
|
1.0
|
HB3
|
A:CYS26
|
3.6
|
3.8
|
1.0
|
CA
|
A:CYS13
|
3.9
|
1.7
|
1.0
|
HB3
|
A:CYS15
|
4.0
|
1.8
|
1.0
|
SG
|
A:CYS24
|
4.1
|
0.8
|
1.0
|
CD
|
A:CD102
|
4.1
|
1.0
|
1.0
|
CD
|
A:CD104
|
4.3
|
0.9
|
1.0
|
N
|
A:CYS15
|
4.3
|
1.1
|
1.0
|
C
|
A:CYS13
|
4.3
|
1.5
|
1.0
|
HB2
|
A:CYS29
|
4.3
|
2.8
|
1.0
|
HB3
|
A:CYS13
|
4.4
|
2.0
|
1.0
|
HB3
|
A:CYS29
|
4.4
|
2.7
|
1.0
|
CA
|
A:CYS15
|
4.4
|
1.4
|
1.0
|
CA
|
A:CYS7
|
4.6
|
2.0
|
1.0
|
HA
|
A:CYS7
|
4.7
|
2.3
|
1.0
|
O
|
A:CYS13
|
4.7
|
1.9
|
1.0
|
H
|
A:CYS26
|
4.7
|
1.2
|
1.0
|
N
|
A:THR14
|
4.8
|
1.8
|
1.0
|
CA
|
A:CYS26
|
4.8
|
2.0
|
1.0
|
H
|
A:THR14
|
4.9
|
2.5
|
1.0
|
CB
|
A:CYS29
|
4.9
|
2.0
|
1.0
|
HA
|
A:CYS15
|
5.0
|
1.6
|
1.0
|
|
Cadmium binding site 3 out
of 3 in 2mhu
Go back to
Cadmium Binding Sites List in 2mhu
Cadmium binding site 3 out
of 3 in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cd104
b:0.9
occ:1.00
|
HA
|
A:CYS24
|
2.5
|
0.6
|
1.0
|
SG
|
A:CYS21
|
2.6
|
1.0
|
1.0
|
SG
|
A:CYS5
|
2.6
|
1.2
|
1.0
|
SG
|
A:CYS24
|
2.6
|
0.8
|
1.0
|
SG
|
A:CYS7
|
2.7
|
1.2
|
1.0
|
HB2
|
A:CYS7
|
3.0
|
2.8
|
1.0
|
H
|
A:CYS7
|
3.2
|
1.4
|
1.0
|
HA
|
A:CYS5
|
3.2
|
1.3
|
1.0
|
CB
|
A:CYS24
|
3.2
|
0.6
|
1.0
|
H
|
A:LYS25
|
3.2
|
1.1
|
1.0
|
HB2
|
A:CYS21
|
3.2
|
1.1
|
1.0
|
HB2
|
A:CYS24
|
3.2
|
0.5
|
1.0
|
HB2
|
A:CYS5
|
3.3
|
1.2
|
1.0
|
CA
|
A:CYS24
|
3.3
|
0.6
|
1.0
|
CB
|
A:CYS21
|
3.3
|
0.9
|
1.0
|
HB3
|
A:CYS21
|
3.4
|
1.2
|
1.0
|
CB
|
A:CYS7
|
3.4
|
2.1
|
1.0
|
CB
|
A:CYS5
|
3.4
|
1.3
|
1.0
|
H
|
A:CYS26
|
3.7
|
1.2
|
1.0
|
CA
|
A:CYS5
|
3.7
|
1.4
|
1.0
|
H
|
A:SER6
|
3.9
|
1.4
|
1.0
|
N
|
A:CYS7
|
4.0
|
1.6
|
1.0
|
N
|
A:LYS25
|
4.0
|
1.1
|
1.0
|
HB3
|
A:CYS7
|
4.2
|
3.1
|
1.0
|
C
|
A:CYS24
|
4.2
|
0.9
|
1.0
|
CD
|
A:CD103
|
4.3
|
1.3
|
1.0
|
N
|
A:SER6
|
4.3
|
1.4
|
1.0
|
HB3
|
A:CYS24
|
4.3
|
0.8
|
1.0
|
CA
|
A:CYS7
|
4.3
|
2.0
|
1.0
|
C
|
A:CYS5
|
4.3
|
1.4
|
1.0
|
HB2
|
A:CYS26
|
4.3
|
3.9
|
1.0
|
N
|
A:CYS24
|
4.3
|
0.7
|
1.0
|
HB3
|
A:CYS5
|
4.4
|
1.4
|
1.0
|
SG
|
A:CYS15
|
4.5
|
1.2
|
1.0
|
CD
|
A:CD102
|
4.5
|
1.0
|
1.0
|
SG
|
A:CYS26
|
4.5
|
1.3
|
1.0
|
H
|
A:CYS24
|
4.6
|
0.8
|
1.0
|
N
|
A:CYS26
|
4.7
|
1.5
|
1.0
|
CA
|
A:CYS21
|
4.8
|
1.1
|
1.0
|
O
|
A:ASN4
|
4.8
|
2.3
|
1.0
|
CB
|
A:CYS26
|
4.9
|
2.5
|
1.0
|
HG
|
A:SER6
|
4.9
|
3.7
|
1.0
|
HA
|
A:CYS7
|
5.0
|
2.3
|
1.0
|
|
Reference:
B.A.Messerle,
A.Schaffer,
M.Vasak,
J.H.Kagi,
K.Wuthrich.
Three-Dimensional Structure of Human [113CD7]Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy. J.Mol.Biol. V. 214 765 1990.
ISSN: ISSN 0022-2836
PubMed: 2388267
DOI: 10.1016/0022-2836(90)90291-S
Page generated: Fri Jul 19 15:03:51 2024
|