Chemical elements
  Cadmium
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    PDB 1a4k-1exq
    PDB 1f48-1ihu
    PDB 1ii0-1mhu
    PDB 1mms-1qvg
    PDB 1qy0-1wb6
    PDB 1wje-2avp
    PDB 2b3p-2j6e
    PDB 2jdz-2x05
      2jdz
      2jf5
      2jhf
      2jih
      2jsc
      2mhu
      2mpa
      2mrb
      2mrt
      2nnd
      2nne
      2oa9
      2otj
      2otl
      2ozq
      2p5q
      2p64
      2pzi
      2q88
      2q89
      2qa4
      2qex
      2qp9
      2qtf
      2qth
      2r1f
      2v2i
      2v2j
      2v2l
      2v2m
      2v2n
      2v2o
      2v2p
      2v2r
      2v2s
      2v4b
      2vg9
      2vli
      2vzo
      2vzs
      2vzt
      2vzu
      2w0o
      2w2c
      2w5e
      2w5f
      2wxt
      2wxu
      2wy6
      2x05
    PDB 2x09-3ccj
    PDB 3ccl-3ggf
    PDB 3h1u-3p5v
    PDB 3p5w-8ice

Cadmium in the structure of Crystal Structure of The Poplar Glutathione Peroxidase 5 in the Reduced Form (pdb 2p5q)






The binding sites of Cadmium atom in the structure of Crystal Structure of The Poplar Glutathione Peroxidase 5 in the Reduced Form (pdb code 2p5q). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 2p5q structure was solved by C.S.KOH, C.DIDIERJEAN, N.NAVROT, S.PANJIKAR, G.MULLIERT, N.ROUHIER, J.-P.JACQUOT, A.AUBRY, O.SHAWKATALY, C.CORBIER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)30.0-2.0
Space groupH3
a (A)221.665
b (A)221.665
c (A)48.142
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)17.8
Rfree (%)20


Cadmium Binding Sites:

Cadmium binding site 1 out of 32 in 2p5q


Cadmium binding site 1 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 1 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu22, A: Asn84, A: Asp103, A: Lys104, A: Hoh856, A: Hoh876, A: Hoh891, A: Hoh979, A: Hoh1002, A: Hoh1006, A: Hoh1018,

conact list:


AtomAtomDistance (A)
CdOE1 A:Glu222.41
CdOE2 A:Glu222.73
CdCD A:Glu222.92
CdCG A:Glu224.43
CdND2 A:Asn844.30
CdCB A:Asp1034.30
CdOD2 A:Asp1032.48
CdOD1 A:Asp1032.51
CdCG A:Asp1032.81
CdO A:Lys1044.43
CdN A:Lys1044.98
CdO A:Hoh8562.42
CdO A:Hoh8764.52
CdO A:Hoh8914.74
CdO A:Hoh9793.30
CdO A:Hoh10022.53
CdO A:Hoh10064.20
CdO A:Hoh10182.53

interactive model:


Cadmium binding site 2 out of 32 in 2p5q


Cadmium binding site 2 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 2 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys92, A: Cd731, A: Act801, A: Act803, A: Hoh868, A: Hoh869,

conact list:


AtomAtomDistance (A)
CdCB A:Cys923.37
CdSG A:Cys922.56
CdCA A:Cys924.19
CdCD A:Cd7313.73
CdO A:Act8012.56
CdCH3 A:Act8014.45
CdC A:Act8012.94
CdOXT A:Act8012.55
CdO A:Act8033.91
CdCH3 A:Act8034.29
CdC A:Act8033.32
CdOXT A:Act8032.49
CdO A:Hoh8684.98
CdO A:Hoh8694.40

interactive model:


Cadmium binding site 3 out of 32 in 2p5q


Cadmium binding site 3 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 3 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys44, A: Gly45, A: Met46, A: Glu79, A: Trp133, A: Asn134, A: Hoh930, A: Hoh971, A: Hoh972, A: Hoh1009, B: Hoh913,

conact list:


AtomAtomDistance (A)
CdCB A:Cys443.51
CdSG A:Cys442.60
CdC A:Cys444.39
CdCA A:Cys443.85
CdN A:Gly453.89
CdCA A:Gly454.99
CdCE A:Met464.92
CdOE1 A:Glu792.43
CdOE2 A:Glu793.05
CdCD A:Glu793.10
CdCG A:Glu794.57
CdCD1 A:Trp1333.77
CdCD2 A:Trp1334.89
CdCG A:Trp1334.94
CdCZ2 A:Trp1333.90
CdCE2 A:Trp1333.64
CdNE1 A:Trp1332.74
CdND2 A:Asn1343.73
CdCG A:Asn1344.88
CdO A:Hoh9302.71
CdO A:Hoh9712.73
CdO A:Hoh9724.58
CdO A:Hoh10092.22
CdO B:Hoh9134.80

interactive model:


Cadmium binding site 4 out of 32 in 2p5q


Cadmium binding site 4 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 4 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Val147, A: Asp148, A: Asp162, B: Thr153, B: Thr154, B: Ser155, A: Hoh804, A: Hoh825, A: Hoh861, A: Hoh866, A: Hoh898, A: Hoh899, A: Hoh900, B: Hoh857, B: Hoh872, B: Hoh875, B: Hoh899,

conact list:


AtomAtomDistance (A)
CdO A:Val1474.14
CdCB A:Asp1484.70
CdOD2 A:Asp1483.41
CdOD1 A:Asp1482.45
CdCG A:Asp1483.29
CdOD1 A:Asp1624.32
CdCG A:Asp1624.94
CdO B:Thr1532.41
CdCB B:Thr1534.45
CdC B:Thr1533.52
CdCA B:Thr1534.51
CdN B:Thr1544.27
CdC B:Thr1544.80
CdCA B:Thr1544.18
CdN B:Ser1554.35
CdO A:Hoh8042.61
CdO A:Hoh8254.38
CdO A:Hoh8612.67
CdO A:Hoh8662.50
CdO A:Hoh8984.51
CdO A:Hoh8994.67
CdO A:Hoh9003.94
CdO B:Hoh8572.64
CdO B:Hoh8723.83
CdO B:Hoh8754.33
CdO B:Hoh8994.81

interactive model:


Cadmium binding site 5 out of 32 in 2p5q


Cadmium binding site 5 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 5 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp85, A: Asp89, A: Hoh869, A: Hoh916,

conact list:


AtomAtomDistance (A)
CdO A:Asp854.26
CdCB A:Asp854.33
CdOD2 A:Asp852.66
CdC A:Asp854.84
CdOD1 A:Asp852.39
CdCG A:Asp852.85
CdCA A:Asp854.91
CdCB A:Asp894.37
CdOD2 A:Asp892.41
CdOD1 A:Asp892.62
CdCG A:Asp892.86
CdO A:Hoh8694.43
CdO A:Hoh9164.99

interactive model:


Cadmium binding site 6 out of 32 in 2p5q


Cadmium binding site 6 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 6 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu78, A: Hoh822, A: Hoh927, A: Hoh965,

conact list:


AtomAtomDistance (A)
CdOE1 A:Glu782.50
CdOE2 A:Glu782.69
CdCD A:Glu782.93
CdCG A:Glu784.42
CdO A:Hoh8224.94
CdO A:Hoh9272.26
CdO A:Hoh9652.50

interactive model:


Cadmium binding site 7 out of 32 in 2p5q


Cadmium binding site 7 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 7 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys92, A: Thr93, A: Lys96, A: Cd708, A: Act801, A: Act803, A: Hoh1000, A: Hoh1001,

conact list:


AtomAtomDistance (A)
CdO A:Cys922.43
CdCB A:Cys923.64
CdSG A:Cys922.57
CdC A:Cys923.18
CdCA A:Cys923.57
CdN A:Thr934.27
CdCA A:Thr934.78
CdCB A:Lys964.99
CdCG A:Lys964.32
CdCA A:Lys964.79
CdNZ A:Lys964.30
CdCD A:Cd7083.73
CdO A:Act8014.99
CdO A:Act8032.44
CdCH3 A:Act8034.62
CdC A:Act8033.14
CdOXT A:Act8033.01
CdO A:Hoh10002.63
CdO A:Hoh10014.52

interactive model:


Cadmium binding site 8 out of 32 in 2p5q


Cadmium binding site 8 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 8 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp85, B: Cd706, B: Act808, B: Hoh948,

conact list:


AtomAtomDistance (A)
CdCB B:Asp854.66
CdOD2 B:Asp853.16
CdOD1 B:Asp853.15
CdCG B:Asp853.39
CdCD B:Cd7063.53
CdO B:Act8083.64
CdC B:Act8084.97
CdO B:Hoh9482.55

interactive model:


Cadmium binding site 9 out of 32 in 2p5q


Cadmium binding site 9 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 9 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp85, B: Asp89, B: Cd701, B: Act808, B: Hoh847, B: Hoh891, B: Hoh948,

conact list:


AtomAtomDistance (A)
CdO B:Asp854.35
CdCB B:Asp854.65
CdOD2 B:Asp853.09
CdC B:Asp854.83
CdOD1 B:Asp852.72
CdCG B:Asp853.22
CdCB B:Asp894.39
CdOD2 B:Asp892.54
CdOD1 B:Asp892.55
CdCG B:Asp892.88
CdCD B:Cd7013.53
CdO B:Act8082.58
CdCH3 B:Act8084.75
CdC B:Act8083.47
CdOXT B:Act8083.66
CdO B:Hoh8473.90
CdO B:Hoh8914.96
CdO B:Hoh9483.92

interactive model:


Cadmium binding site 10 out of 32 in 2p5q


Cadmium binding site 10 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 10 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Lys43, B: Cys44, B: Gly45, B: Glu79, B: Trp133, B: Asn134, B: Hoh915, B: Hoh919, B: Hoh933, B: Hoh946, B: Hoh947,

conact list:


AtomAtomDistance (A)
CdO B:Lys434.67
CdN B:Cys444.86
CdCB B:Cys443.47
CdSG B:Cys442.84
CdC B:Cys444.22
CdCA B:Cys443.61
CdN B:Gly453.77
CdCA B:Gly454.93
CdOE1 B:Glu792.56
CdOE2 B:Glu792.51
CdCD B:Glu792.87
CdCG B:Glu794.38
CdCD1 B:Trp1334.68
CdCZ2 B:Trp1334.31
CdCE2 B:Trp1334.31
CdNE1 B:Trp1333.57
CdND2 B:Asn1344.40
CdO B:Hoh9152.87
CdO B:Hoh9194.85
CdO B:Hoh9334.83
CdO B:Hoh9462.75
CdO B:Hoh9472.78

interactive model:


Cadmium binding site 11 out of 32 in 2p5q


Cadmium binding site 11 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 11 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Thr153, A: Thr154, A: Ser155, B: Val147, B: Asp148, B: Asp162, A: Hoh873, A: Hoh874, A: Hoh888, B: Hoh809, B: Hoh813, B: Hoh836, B: Hoh841, B: Hoh856, B: Hoh864,

conact list:


AtomAtomDistance (A)
CdO A:Thr1532.44
CdCB A:Thr1534.48
CdC A:Thr1533.51
CdCA A:Thr1534.54
CdN A:Thr1544.22
CdC A:Thr1544.79
CdCA A:Thr1544.12
CdN A:Ser1554.40
CdO B:Val1474.28
CdCB B:Asp1484.71
CdOD2 B:Asp1482.45
CdOD1 B:Asp1483.40
CdCG B:Asp1483.29
CdOD1 B:Asp1624.21
CdCG B:Asp1624.84
CdO A:Hoh8733.81
CdO A:Hoh8744.26
CdO A:Hoh8882.58
CdO B:Hoh8092.61
CdO B:Hoh8134.32
CdO B:Hoh8362.53
CdO B:Hoh8412.53
CdO B:Hoh8564.51
CdO B:Hoh8644.03

interactive model:


Cadmium binding site 12 out of 32 in 2p5q


Cadmium binding site 12 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 12 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ser11, B: His13, B: Lys31, B: Asp143, B: Hoh945, B: Hoh953,

conact list:


AtomAtomDistance (A)
CdOG B:Ser114.38
CdNE2 B:His134.61
CdCB B:His133.73
CdND1 B:His132.53
CdCD2 B:His134.65
CdCE1 B:His133.47
CdCG B:His133.51
CdCB B:Lys314.70
CdCE B:Lys313.61
CdCD B:Lys313.61
CdCG B:Lys313.98
CdNZ B:Lys314.12
CdO B:Asp1434.42
CdC B:Asp1434.90
CdO B:Hoh9452.72
CdO B:Hoh9533.51

interactive model:


Cadmium binding site 13 out of 32 in 2p5q


Cadmium binding site 13 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 13 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Glu59, B: Glu98, B: Hoh874, B: Hoh901, B: Hoh925, B: Hoh926, B: Hoh930,

conact list:


AtomAtomDistance (A)
CdOE1 B:Glu592.94
CdOE2 B:Glu592.61
CdCD B:Glu593.13
CdCG B:Glu594.63
CdOE1 B:Glu982.66
CdOE2 B:Glu982.62
CdCD B:Glu982.99
CdCG B:Glu984.49
CdO B:Hoh8744.51
CdO B:Hoh9014.88
CdO B:Hoh9252.58
CdO B:Hoh9262.68
CdO B:Hoh9303.89

interactive model:


Cadmium binding site 14 out of 32 in 2p5q


Cadmium binding site 14 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 14 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Lys18, B: Glu22, B: Asn84, B: Asp103, B: Lys104, B: Hoh848, B: Hoh889, B: Hoh938, B: Hoh950,

conact list:


AtomAtomDistance (A)
CdCD B:Lys185.00
CdOE1 B:Glu222.59
CdOE2 B:Glu222.63
CdCD B:Glu222.95
CdCG B:Glu224.46
CdND2 B:Asn844.26
CdCB B:Asp1034.32
CdOD2 B:Asp1032.48
CdOD1 B:Asp1032.59
CdCG B:Asp1032.85
CdO B:Lys1044.50
CdO B:Hoh8482.49
CdO B:Hoh8894.45
CdO B:Hoh9382.56
CdO B:Hoh9504.33

interactive model:


Cadmium binding site 15 out of 32 in 2p5q


Cadmium binding site 15 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 15 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp63, B: Hoh878, B: Hoh930,

conact list:


AtomAtomDistance (A)
CdCB B:Asp634.98
CdOD2 B:Asp633.20
CdOD1 B:Asp633.08
CdCG B:Asp633.50
CdO B:Hoh8784.51
CdO B:Hoh9303.31

interactive model:


Cadmium binding site 16 out of 32 in 2p5q


Cadmium binding site 16 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 16 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Lys60, B: Tyr61, B: Leu157, B: Glu160, B: Hoh825, B: Hoh893, B: Hoh922,

conact list:


AtomAtomDistance (A)
CdCE B:Lys603.71
CdCD B:Lys603.97
CdNZ B:Lys602.62
CdOH B:Tyr614.67
CdCD2 B:Leu1574.97
CdOE1 B:Glu1602.44
CdOE2 B:Glu1602.52
CdCD B:Glu1602.79
CdCG B:Glu1604.25
CdO B:Hoh8254.24
CdO B:Hoh8934.85
CdO B:Hoh9222.88

interactive model:


Cadmium binding site 17 out of 32 in 2p5q


Cadmium binding site 17 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 17 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Lys18, C: Glu22, C: Asn84, C: Asp103, C: Lys104, C: Hoh828, C: Hoh862, C: Hoh884, C: Hoh911, C: Hoh914, C: Hoh959, C: Hoh962,

conact list:


AtomAtomDistance (A)
CdCD C:Lys184.81
CdOE1 C:Glu222.54
CdOE2 C:Glu222.68
CdCD C:Glu222.96
CdCG C:Glu224.48
CdND2 C:Asn844.44
CdCB C:Asp1034.32
CdOD2 C:Asp1032.47
CdOD1 C:Asp1032.56
CdCG C:Asp1032.84
CdO C:Lys1044.60
CdO C:Hoh8283.94
CdO C:Hoh8624.31
CdO C:Hoh8842.59
CdO C:Hoh9114.31
CdO C:Hoh9144.76
CdO C:Hoh9592.64
CdO C:Hoh9622.45

interactive model:


Cadmium binding site 18 out of 32 in 2p5q


Cadmium binding site 18 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 18 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Cys92, C: Lys96, C: Ser97, C: Cd710, C: Act804, C: Hoh836, C: Hoh843, C: Hoh885, C: Hoh934, C: Hoh948, C: Hoh958,

conact list:


AtomAtomDistance (A)
CdCB C:Cys923.34
CdSG C:Cys922.56
CdCA C:Cys924.08
CdCA C:Lys964.86
CdO C:Ser974.56
CdCD C:Cd7103.70
CdO C:Act8042.70
CdCH3 C:Act8044.54
CdC C:Act8043.06
CdOXT C:Act8042.66
CdO C:Hoh8362.55
CdO C:Hoh8434.36
CdO C:Hoh8854.44
CdO C:Hoh9344.21
CdO C:Hoh9482.46
CdO C:Hoh9584.08

interactive model:


Cadmium binding site 19 out of 32 in 2p5q


Cadmium binding site 19 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 19 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Asp89, C: Cys92, C: Cd709, A: Hoh1008, C: Hoh948, C: Hoh957, C: Hoh958,

conact list:


AtomAtomDistance (A)
CdOD1 C:Asp894.60
CdCB C:Cys923.31
CdSG C:Cys922.65
CdCA C:Cys924.80
CdCD C:Cd7093.70
CdO A:Hoh10083.70
CdO C:Hoh9483.69
CdO C:Hoh9572.51
CdO C:Hoh9582.55

interactive model:


Cadmium binding site 20 out of 32 in 2p5q


Cadmium binding site 20 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 20 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Asp85, C: Asp89, C: Hoh874, C: Hoh875, C: Hoh916, C: Hoh965,

conact list:


AtomAtomDistance (A)
CdO C:Asp854.36
CdCB C:Asp854.41
CdOD2 C:Asp852.67
CdC C:Asp854.84
CdOD1 C:Asp852.55
CdCG C:Asp852.94
CdCA C:Asp854.99
CdCB C:Asp894.43
CdOD2 C:Asp892.44
CdOD1 C:Asp892.74
CdCG C:Asp892.94
CdO C:Hoh8742.67
CdO C:Hoh8754.38
CdO C:Hoh9162.50
CdO C:Hoh9652.70

interactive model:


Cadmium binding site 21 out of 32 in 2p5q


Cadmium binding site 21 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 21 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Val147, C: Asp148, C: Asp162, D: Thr153, D: Thr154, D: Ser155, C: Hoh805, C: Hoh837, C: Hoh839, C: Hoh841, C: Hoh901, D: Hoh831, D: Hoh858, D: Hoh865,

conact list:


AtomAtomDistance (A)
CdO C:Val1474.19
CdCB C:Asp1484.71
CdOD2 C:Asp1483.26
CdOD1 C:Asp1482.54
CdCG C:Asp1483.26
CdOD1 C:Asp1624.24
CdCG C:Asp1624.93
CdO D:Thr1532.50
CdCB D:Thr1534.54
CdC D:Thr1533.60
CdCA D:Thr1534.62
CdN D:Thr1544.33
CdC D:Thr1544.83
CdCA D:Thr1544.18
CdN D:Ser1554.37
CdO C:Hoh8054.34
CdO C:Hoh8374.63
CdO C:Hoh8392.78
CdO C:Hoh8412.63
CdO C:Hoh9012.67
CdO D:Hoh8312.66
CdO D:Hoh8583.83
CdO D:Hoh8654.53

interactive model:


Cadmium binding site 22 out of 32 in 2p5q


Cadmium binding site 22 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 22 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Cys44, C: Gly45, C: Met46, C: Glu79, C: Trp133, C: Asn134, C: Hoh872, C: Hoh907, C: Hoh956, C: Hoh964,

conact list:


AtomAtomDistance (A)
CdCB C:Cys443.47
CdSG C:Cys442.64
CdC C:Cys444.40
CdCA C:Cys443.76
CdN C:Gly453.96
CdCE C:Met464.88
CdOE1 C:Glu792.52
CdOE2 C:Glu793.05
CdCD C:Glu793.15
CdCG C:Glu794.63
CdCD1 C:Trp1333.68
CdCD2 C:Trp1334.74
CdCG C:Trp1334.82
CdCZ2 C:Trp1333.73
CdCE2 C:Trp1333.48
CdNE1 C:Trp1332.61
CdND2 C:Asn1343.67
CdCG C:Asn1344.83
CdO C:Hoh8722.77
CdO C:Hoh9074.13
CdO C:Hoh9562.74
CdO C:Hoh9642.28

interactive model:


Cadmium binding site 23 out of 32 in 2p5q


Cadmium binding site 23 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 23 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Ser11, C: His13, C: Lys31, C: Asp143,

conact list:


AtomAtomDistance (A)
CdOG C:Ser114.22
CdNE2 C:His134.80
CdCB C:His133.82
CdND1 C:His132.72
CdCD2 C:His134.82
CdCE1 C:His133.67
CdCG C:His133.66
CdCB C:Lys315.00
CdCE C:Lys314.02
CdCD C:Lys313.94
CdCG C:Lys314.43
CdNZ C:Lys314.29
CdO C:Asp1434.05
CdC C:Asp1434.76

interactive model:


Cadmium binding site 24 out of 32 in 2p5q


Cadmium binding site 24 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 24 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys96, C: Glu59, C: Lys62, C: Glu98, C: Act802, A: Hoh1000, C: Hoh815, C: Hoh935, C: Hoh946,

conact list:


AtomAtomDistance (A)
CdNZ A:Lys964.24
CdOE1 C:Glu592.51
CdOE2 C:Glu592.48
CdCD C:Glu592.83
CdCG C:Glu594.34
CdCE C:Lys623.92
CdNZ C:Lys624.59
CdOE1 C:Glu982.49
CdOE2 C:Glu982.41
CdCD C:Glu982.78
CdCG C:Glu984.30
CdO C:Act8022.54
CdCH3 C:Act8024.44
CdC C:Act8022.93
CdOXT C:Act8022.55
CdO A:Hoh10004.44
CdO C:Hoh8154.71
CdO C:Hoh9354.15
CdO C:Hoh9464.71

interactive model:


Cadmium binding site 25 out of 32 in 2p5q


Cadmium binding site 25 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 25 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Lys18, D: Glu22, D: Asn84, D: Asp103, D: Lys104, D: Hoh866, D: Hoh885, D: Hoh910, D: Hoh935,

conact list:


AtomAtomDistance (A)
CdCD D:Lys184.56
CdOE1 D:Glu222.55
CdOE2 D:Glu222.56
CdCD D:Glu222.90
CdCG D:Glu224.41
CdND2 D:Asn844.60
CdCB D:Asp1034.34
CdOD2 D:Asp1032.50
CdOD1 D:Asp1032.70
CdCG D:Asp1032.91
CdO D:Lys1044.70
CdO D:Hoh8664.25
CdO D:Hoh8854.86
CdO D:Hoh9105.00
CdO D:Hoh9352.47

interactive model:


Cadmium binding site 26 out of 32 in 2p5q


Cadmium binding site 26 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 26 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Asp85, D: Asp89, D: Cd707, D: Act807, D: Hoh841, D: Hoh862, D: Hoh919, D: Hoh931, D: Hoh938,

conact list:


AtomAtomDistance (A)
CdO D:Asp854.47
CdCB D:Asp854.51
CdOD2 D:Asp852.85
CdC D:Asp854.96
CdOD1 D:Asp852.49
CdCG D:Asp853.02
CdCB D:Asp894.38
CdOD2 D:Asp892.52
CdOD1 D:Asp892.78
CdCG D:Asp892.95
CdCD D:Cd7073.75
CdO D:Act8072.69
CdC D:Act8074.00
CdOXT D:Act8074.64
CdO D:Hoh8413.76
CdO D:Hoh8622.53
CdO D:Hoh9194.23
CdO D:Hoh9312.61
CdO D:Hoh9384.00

interactive model:


Cadmium binding site 27 out of 32 in 2p5q


Cadmium binding site 27 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 27 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Lys21, D: Asp85, D: Asp89, D: Cd704, D: Act805, D: Act807, D: Hoh841, D: Hoh908,

conact list:


AtomAtomDistance (A)
CdCE D:Lys214.61
CdNZ D:Lys213.61
CdCB D:Asp853.99
CdOD2 D:Asp854.11
CdOD1 D:Asp852.51
CdCG D:Asp853.32
CdCA D:Asp854.74
CdOD1 D:Asp895.00
CdCD D:Cd7043.75
CdO D:Act8052.78
CdCH3 D:Act8054.58
CdC D:Act8053.08
CdOXT D:Act8052.60
CdO D:Act8072.85
CdCH3 D:Act8074.54
CdC D:Act8073.06
CdOXT D:Act8072.50
CdO D:Hoh8413.50
CdO D:Hoh9084.13

interactive model:


Cadmium binding site 28 out of 32 in 2p5q


Cadmium binding site 28 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 28 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Thr153, C: Thr154, C: Ser155, D: Val147, D: Asp148, D: Asp162, C: Hoh826, C: Hoh846, C: Hoh849, C: Hoh933, D: Hoh809, D: Hoh829, D: Hoh830, D: Hoh836, D: Hoh877, D: Hoh887, D: Hoh915,

conact list:


AtomAtomDistance (A)
CdO C:Thr1532.47
CdCB C:Thr1534.46
CdC C:Thr1533.53
CdCA C:Thr1534.54
CdN C:Thr1544.25
CdC C:Thr1544.80
CdCA C:Thr1544.14
CdN C:Ser1554.38
CdO D:Val1474.34
CdCB D:Asp1484.74
CdOD2 D:Asp1482.51
CdOD1 D:Asp1483.44
CdCG D:Asp1483.33
CdOD1 D:Asp1624.21
CdCG D:Asp1624.86
CdO C:Hoh8264.39
CdO C:Hoh8462.60
CdO C:Hoh8493.83
CdO C:Hoh9334.23
CdO D:Hoh8092.68
CdO D:Hoh8292.46
CdO D:Hoh8302.58
CdO D:Hoh8364.56
CdO D:Hoh8773.68
CdO D:Hoh8874.44
CdO D:Hoh9153.95

interactive model:


Cadmium binding site 29 out of 32 in 2p5q


Cadmium binding site 29 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 29 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 29 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Ser11, D: His13, D: Lys31, D: Asp143, D: Hoh890, D: Hoh946,

conact list:


AtomAtomDistance (A)
CdOG D:Ser114.26
CdNE2 D:His134.76
CdCB D:His133.67
CdND1 D:His132.66
CdCD2 D:His134.73
CdCE1 D:His133.65
CdCG D:His133.55
CdCB D:Lys314.90
CdCE D:Lys313.57
CdCD D:Lys313.28
CdCG D:Lys314.43
CdNZ D:Lys313.22
CdO D:Asp1434.23
CdC D:Asp1434.78
CdO D:Hoh8904.97
CdO D:Hoh9462.92

interactive model:


Cadmium binding site 30 out of 32 in 2p5q


Cadmium binding site 30 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 30 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 30 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Cys44, D: Gly45, D: Glu79, D: Trp133, D: Asn134, D: Hoh892, D: Hoh947, D: Hoh948,

conact list:


AtomAtomDistance (A)
CdCB D:Cys443.57
CdSG D:Cys442.77
CdC D:Cys444.31
CdCA D:Cys443.78
CdN D:Gly453.77
CdCA D:Gly454.88
CdOE1 D:Glu792.49
CdOE2 D:Glu792.80
CdCD D:Glu792.99
CdCG D:Glu794.49
CdCD1 D:Trp1334.22
CdCZ2 D:Trp1334.00
CdCE2 D:Trp1333.91
CdNE1 D:Trp1333.13
CdND2 D:Asn1344.04
CdO D:Hoh8922.84
CdO D:Hoh9472.76
CdO D:Hoh9482.55

interactive model:


Cadmium binding site 31 out of 32 in 2p5q


Cadmium binding site 31 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 31 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 31 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Glu59, D: Glu98, D: Hoh808, D: Hoh873, D: Hoh925, D: Hoh926, D: Hoh927,

conact list:


AtomAtomDistance (A)
CdOE1 D:Glu592.81
CdOE2 D:Glu593.02
CdCD D:Glu593.30
CdCG D:Glu594.81
CdOE1 D:Glu982.80
CdOE2 D:Glu982.76
CdCD D:Glu983.13
CdCG D:Glu984.63
CdO D:Hoh8084.07
CdO D:Hoh8733.15
CdO D:Hoh9254.03
CdO D:Hoh9263.15
CdO D:Hoh9272.99

interactive model:


Cadmium binding site 32 out of 32 in 2p5q


Cadmium binding site 32 out of 32 in 2p5q
Click to enlarge
stereopicture of Cadmium binding site 32 out of 32 in 2p5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 32 of Cadmium in the PDB 2p5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Lys60, D: Tyr61, D: Glu160, D: Hoh819, D: Hoh872, D: Hoh875, D: Hoh896, D: Hoh905, D: Hoh906,

conact list:


AtomAtomDistance (A)
CdCE D:Lys603.95
CdCD D:Lys603.89
CdNZ D:Lys602.90
CdOH D:Tyr614.86
CdOE1 D:Glu1602.61
CdOE2 D:Glu1602.72
CdCD D:Glu1602.98
CdCG D:Glu1604.43
CdO D:Hoh8194.32
CdO D:Hoh8724.86
CdO D:Hoh8753.18
CdO D:Hoh8963.79
CdO D:Hoh9053.78
CdO D:Hoh9064.06

interactive model:




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