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Cadmium in PDB 2p64: D Domain of B-Trcp

Protein crystallography data

The structure of D Domain of B-Trcp, PDB code: 2p64 was solved by D.Neculai, S.Orlicky, D.Ceccarelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.78 / 2.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 71.316, 71.316, 116.301, 90.00, 90.00, 90.00
R / Rfree (%) 23.9 / 26.7

Cadmium Binding Sites:

The binding sites of Cadmium atom in the D Domain of B-Trcp (pdb code 2p64). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the D Domain of B-Trcp, PDB code: 2p64:

Cadmium binding site 1 out of 1 in 2p64

Go back to Cadmium Binding Sites List in 2p64
Cadmium binding site 1 out of 1 in the D Domain of B-Trcp


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of D Domain of B-Trcp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd100

b:27.2
occ:0.50
OE2 A:GLU146 2.2 43.7 1.0
OE1 A:GLU146 2.5 46.5 1.0
SG B:CYS161 2.5 51.2 1.0
CD A:GLU146 2.7 47.7 1.0
CB B:CYS161 3.3 53.5 1.0
CG A:GLU146 4.2 46.0 1.0
CA B:CYS161 4.8 53.9 1.0
CD1 B:TYR163 4.8 41.4 1.0
OE1 B:GLN164 4.8 50.9 1.0
CB A:GLU146 4.9 47.2 1.0
CG B:GLN164 4.9 48.9 1.0
CB B:TYR163 4.9 46.6 1.0

Reference:

X.Tang, S.Orlicky, Z.Lin, A.Willems, D.Neculai, D.Ceccarelli, F.Mercurio, B.H.Shilton, F.Sicheri, M.Tyers. Suprafacial Orientation of the SCFCDC4 Dimer Accommodates Multiple Geometries For Substrate Ubiquitination. Cell(Cambridge,Mass.) V. 129 1165 2007.
ISSN: ISSN 0092-8674
PubMed: 17574027
DOI: 10.1016/J.CELL.2007.04.042
Page generated: Wed Oct 28 09:59:59 2020
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