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Cadmium in PDB 2qtf: Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus

Protein crystallography data

The structure of Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus, PDB code: 2qtf was solved by H.Wu, L.Sun, S.J.Brouns, S.Fu, Z.Rao, J.Van Der Oost, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.36 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.073, 72.560, 95.928, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 23.1

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus (pdb code 2qtf). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus, PDB code: 2qtf:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 2qtf

Go back to Cadmium Binding Sites List in 2qtf
Cadmium binding site 1 out of 4 in the Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd401

b:24.0
occ:1.00
OE2 A:GLU92 2.2 26.1 1.0
OE1 A:GLU92 2.4 18.6 1.0
O A:HOH622 2.5 28.7 1.0
O A:HOH769 2.6 35.3 1.0
CD A:GLU92 2.6 19.1 1.0
NH2 A:ARG111 4.0 18.8 1.0
CG A:GLU92 4.2 18.3 1.0
O A:HOH615 4.4 31.1 1.0
NZ A:LYS2 4.6 42.7 1.0
OE1 A:GLU82 4.7 48.0 1.0
OE2 A:GLU82 4.9 50.3 1.0
CB A:GLU92 5.0 14.8 1.0
CZ A:ARG111 5.0 19.9 1.0

Cadmium binding site 2 out of 4 in 2qtf

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Cadmium binding site 2 out of 4 in the Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd402

b:26.0
occ:1.00
NE2 A:HIS97 2.2 19.9 1.0
OD2 A:ASP232 2.3 29.1 1.0
O A:HOH770 2.3 35.6 1.0
O A:HOH661 2.4 28.1 1.0
OD1 A:ASP232 2.4 19.3 1.0
O A:HOH616 2.4 26.9 1.0
O A:HOH698 2.5 35.6 1.0
CG A:ASP232 2.7 21.9 1.0
CD2 A:HIS97 3.2 17.9 1.0
CE1 A:HIS97 3.2 20.5 1.0
O A:HOH662 4.1 42.3 1.0
O A:ACT601 4.2 42.3 1.0
O A:THR233 4.2 22.3 1.0
CB A:ASP232 4.3 21.3 1.0
O A:HOH687 4.3 34.7 1.0
OG1 A:THR193 4.3 26.1 1.0
CG A:HIS97 4.3 20.7 1.0
ND1 A:HIS97 4.4 17.8 1.0
O A:HOH611 4.4 23.8 1.0
O A:HOH635 4.5 30.8 1.0
O A:HOH607 4.6 23.5 1.0
O A:HOH711 4.9 45.9 1.0

Cadmium binding site 3 out of 4 in 2qtf

Go back to Cadmium Binding Sites List in 2qtf
Cadmium binding site 3 out of 4 in the Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd403

b:37.1
occ:1.00
OE1 A:GLU283 2.2 26.0 1.0
O A:HOH632 2.4 34.4 1.0
O A:HOH712 2.6 47.8 1.0
CD A:GLU283 3.1 27.8 1.0
OE2 A:GLU283 3.3 34.4 1.0
CG A:GLU283 4.5 23.7 1.0
OG A:SER280 4.8 35.7 1.0

Cadmium binding site 4 out of 4 in 2qtf

Go back to Cadmium Binding Sites List in 2qtf
Cadmium binding site 4 out of 4 in the Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd404

b:54.0
occ:1.00
O A:HOH771 2.6 44.6 1.0
O A:HOH644 2.6 34.5 1.0
OE1 A:GLU108 2.8 33.4 1.0
CD A:GLU108 3.6 38.5 1.0
CG A:GLU108 3.7 26.6 1.0
CD2 A:LEU112 4.4 29.1 1.0
OE2 A:GLU108 4.7 36.5 1.0
O A:HOH608 4.8 21.0 1.0
CG A:LEU112 4.9 27.4 1.0
NH2 A:ARG152 5.0 56.6 1.0

Reference:

H.Wu, L.Sun, S.J.Brouns, S.Fu, J.Akerboom, X.Li, C.Zhang, Z.Rao, J.Van Der Oost. Crystal Structure of A Gtp-Binding Protein From the Hyperthermophilic Archaeon Sulfolobus Solfataricus. To Be Published.
Page generated: Fri Aug 28 13:05:44 2020
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