Cadmium in PDB 2vg9: Crystal Structure of Loop Swap Mutant of Necallimastix Patriciarum XYN11A

All present enzymatic activity of Crystal Structure of Loop Swap Mutant of Necallimastix Patriciarum XYN11A:
3.2.1.8;

The structure of Crystal Structure of Loop Swap Mutant of Necallimastix Patriciarum XYN11A, PDB code: 2vg9 was solved by M.Vardakou, C.Dumon, J.E.Flint, J.W.Murray, P.Christakopoulos, D.P.Weiner, N.Juge, R.J.Lewis, H.J.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	83.05 / 2.0
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	117.420, 117.420, 117.420, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 23.8

The binding sites of Cadmium atom in the Crystal Structure of Loop Swap Mutant of Necallimastix Patriciarum XYN11A (pdb code 2vg9). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Loop Swap Mutant of Necallimastix Patriciarum XYN11A, PDB code: 2vg9:

Cadmium binding site 1 out of 1 in the Crystal Structure of Loop Swap Mutant of Necallimastix Patriciarum XYN11A


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Loop Swap Mutant of Necallimastix Patriciarum XYN11A within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1218 b:11.9 occ:1.00 OD1 A:ASP120 2.3 8.2 1.0 O A:HOH2123 2.4 4.2 1.0 OD2 A:ASP120 2.5 7.8 1.0 CG A:ASP120 2.7 8.8 1.0 NE2 A:GLN83 4.0 12.4 1.0 CG1 A:VAL119 4.1 7.0 1.0 CB A:SER86 4.2 12.3 1.0 CB A:ASP120 4.2 10.8 1.0 OG A:SER86 4.6 14.1 1.0 CA A:ASP120 5.0 11.4 1.0

M.Vardakou, C.Dumon, J.W.Murray, P.Christakopoulos, D.P.Weiner, N.Juge, R.J.Lewis, H.J.Gilbert, J.E.Flint. Understanding the Structural Basis For Substrate and Inhibitor Recognition in Eukaryotic GH11 Xylanases. J.Mol.Biol. V. 375 1293 2008.
ISSN: ISSN 0022-2836
PubMed: 18078955
DOI: 10.1016/J.JMB.2007.11.007