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Cadmium in PDB 2vli: Structure of Deinococcus Radiodurans Tunicamycin Resistance Protein

Protein crystallography data

The structure of Structure of Deinococcus Radiodurans Tunicamycin Resistance Protein, PDB code: 2vli was solved by S.Macedo, U.Kapp, I.Leiros, D.R.Hall, E.Mitchell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.90 / 1.95
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 81.360, 118.160, 81.110, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.4

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Structure of Deinococcus Radiodurans Tunicamycin Resistance Protein (pdb code 2vli). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Structure of Deinococcus Radiodurans Tunicamycin Resistance Protein, PDB code: 2vli:

Cadmium binding site 1 out of 1 in 2vli

Go back to Cadmium Binding Sites List in 2vli
Cadmium binding site 1 out of 1 in the Structure of Deinococcus Radiodurans Tunicamycin Resistance Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of Deinococcus Radiodurans Tunicamycin Resistance Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1177

b:14.4
occ:1.00
OE2 A:GLU145 2.3 14.4 1.0
ND1 A:HIS150 2.3 13.8 1.0
OE1 B:GLU145 2.4 16.8 1.0
ND1 B:HIS150 2.5 14.9 1.0
OE1 A:GLU145 2.6 13.2 1.0
CL A:CL1178 2.6 17.8 1.0
OE2 B:GLU145 2.6 16.7 1.0
CD A:GLU145 2.8 14.2 1.0
CD B:GLU145 2.9 15.4 1.0
CE1 A:HIS150 3.2 14.8 1.0
CE1 B:HIS150 3.2 14.5 1.0
CG A:HIS150 3.4 17.6 1.0
CG B:HIS150 3.6 16.8 1.0
CB A:HIS150 3.8 17.3 1.0
CB B:HIS150 4.0 16.0 1.0
O A:HOH2057 4.3 38.2 1.0
CG A:GLU145 4.4 14.7 1.0
NE2 A:HIS150 4.4 9.1 1.0
CG B:GLU145 4.4 17.5 1.0
O A:HOH2053 4.4 18.7 1.0
NE2 B:HIS150 4.4 11.4 1.0
CD2 A:HIS150 4.5 16.6 1.0
N B:HIS150 4.6 13.9 1.0
CB A:GLN148 4.6 18.0 1.0
CD2 B:HIS150 4.6 14.5 1.0
N A:HIS150 4.6 15.9 1.0
CA A:HIS150 4.9 15.4 1.0
CA B:HIS150 4.9 14.7 1.0
NE2 A:GLN148 4.9 11.7 1.0

Reference:

U.Kapp, S.Macedo, D.R.Hall, I.Leiros, S.M.Mcsweeney, E.Mitchell. Structure of Deinococcus Radiodurans Tunicamycin-Resistance Protein (Tmrd), A Phosphotransferase. Acta Crystallogr.,Sect.F V. 64 479 2008.
ISSN: ESSN 1744-3091
PubMed: 18540055
DOI: 10.1107/S1744309108011822
Page generated: Fri Aug 28 13:09:14 2020
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