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Cadmium in PDB 2xvc: Molecular and Structural Basis of Escrt-III Recruitment to Membranes During Archaeal Cell Division

Protein crystallography data

The structure of Molecular and Structural Basis of Escrt-III Recruitment to Membranes During Archaeal Cell Division, PDB code: 2xvc was solved by R.Y.Samson, T.Obita, B.Hodgson, M.K.Shaw, P.L.Chong, R.L.Williams, S.D.Bell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.50 / 2.15
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.240, 65.240, 60.992, 90.00, 90.00, 120.00
R / Rfree (%) 22.9 / 25.4

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Molecular and Structural Basis of Escrt-III Recruitment to Membranes During Archaeal Cell Division (pdb code 2xvc). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Molecular and Structural Basis of Escrt-III Recruitment to Membranes During Archaeal Cell Division, PDB code: 2xvc:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 2xvc

Go back to Cadmium Binding Sites List in 2xvc
Cadmium binding site 1 out of 2 in the Molecular and Structural Basis of Escrt-III Recruitment to Membranes During Archaeal Cell Division


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Molecular and Structural Basis of Escrt-III Recruitment to Membranes During Archaeal Cell Division within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1260

b:69.9
occ:1.00
ND1 A:HIS206 2.4 49.8 1.0
OE1 A:GLU238 2.6 48.6 1.0
O A:HOH2006 2.7 58.4 1.0
OE2 A:GLU238 2.8 48.0 1.0
CD A:GLU238 3.1 47.0 1.0
CE1 A:HIS206 3.2 50.2 1.0
CG A:HIS206 3.3 49.4 1.0
CB A:HIS206 3.7 48.7 1.0
NE2 A:HIS206 4.4 50.3 1.0
CA A:HIS206 4.4 48.7 1.0
CD2 A:HIS206 4.4 50.2 1.0
CG A:GLU238 4.6 44.7 1.0

Cadmium binding site 2 out of 2 in 2xvc

Go back to Cadmium Binding Sites List in 2xvc
Cadmium binding site 2 out of 2 in the Molecular and Structural Basis of Escrt-III Recruitment to Membranes During Archaeal Cell Division


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Molecular and Structural Basis of Escrt-III Recruitment to Membranes During Archaeal Cell Division within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1261

b:40.2
occ:1.00
O A:HOH2005 2.1 35.9 1.0
NE2 A:HIS208 2.3 47.4 1.0
ND1 A:HIS205 2.4 46.4 1.0
CE1 A:HIS208 3.3 46.9 1.0
CD2 A:HIS208 3.3 46.2 1.0
CE1 A:HIS205 3.4 45.8 1.0
CG A:HIS205 3.4 47.4 1.0
CB A:HIS205 3.6 48.4 1.0
ND1 A:HIS208 4.4 46.8 1.0
O A:HOH2003 4.4 38.9 1.0
CG A:HIS208 4.4 47.2 1.0
CA A:HIS205 4.4 48.9 1.0
NE2 A:HIS205 4.5 45.6 1.0
CD2 A:HIS205 4.5 45.8 1.0
N A:HIS206 4.8 48.5 1.0
O A:HIS206 4.8 48.6 1.0

Reference:

R.Y.Samson, T.Obita, B.Hodgson, M.K.Shaw, P.L.Chong, R.L.Williams, S.D.Bell. Molecular and Structural Basis of Escrt-III Recruitment to Membranes During Archaeal Cell Division. Mol.Cell V. 41 186 2011.
ISSN: ISSN 1097-2765
PubMed: 21255729
DOI: 10.1016/J.MOLCEL.2010.12.018
Page generated: Wed Oct 28 10:00:39 2020
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