Cadmium in the structure of Apo-Fr With Intermediate Content of Pd Ion (pdb 2z5q)

The binding sites of Cadmium atom in the structure of Apo-Fr With Intermediate Content of Pd Ion (pdb code 2z5q). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom. The 2z5q structure was solved by T.UENO, K.HIRATA, M.ABE, M.SUZUKI, S.ABE, N.SHIMIZU, M.YAMAMOTO, M.TAKATA, Y.WATANABE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 40.4-2.1 Space group F432 a (A) 180.570 b (A) 180.570 c (A) 180.570 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.9 Rfree (%) 25.4 Cadmium Binding Sites: Cadmium binding site 1 out of 1 in 2z5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 2z5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp80, A: Gol302, A: Hoh1017, A: Hoh1113, conact list: Atom Atom Distance (A) Cd CB A:Asp80 4.19 Cd OD2 A:Asp80 2.28 Cd OD1 A:Asp80 2.41 Cd CG A:Asp80 2.70 Cd O1 A:Gol302 4.62 Cd O A:Hoh1017 4.42 Cd O A:Hoh1113 2.70 interactive model: