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Cadmium in PDB 2zg9: Crystal Structure of Pd(Allyl)/Apo-H114AFR

Protein crystallography data

The structure of Crystal Structure of Pd(Allyl)/Apo-H114AFR, PDB code: 2zg9 was solved by S.Abe, J.Niemeyer, M.Abe, T.Ueno, T.Hikage, G.Erker, Y.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.13 / 1.75
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.176, 181.176, 181.176, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21.1

Other elements in 2zg9:

The structure of Crystal Structure of Pd(Allyl)/Apo-H114AFR also contains other interesting chemical elements:

Palladium (Pd) 3 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Pd(Allyl)/Apo-H114AFR (pdb code 2zg9). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Pd(Allyl)/Apo-H114AFR, PDB code: 2zg9:

Cadmium binding site 1 out of 1 in 2zg9

Go back to Cadmium Binding Sites List in 2zg9
Cadmium binding site 1 out of 1 in the Crystal Structure of Pd(Allyl)/Apo-H114AFR


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Pd(Allyl)/Apo-H114AFR within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cd175

b:28.9
occ:0.50
O X:HOH286 2.0 36.1 1.0
OD2 X:ASP80 2.2 27.5 1.0
OD1 X:ASP80 2.5 18.9 1.0
CG X:ASP80 2.7 21.2 1.0
CB X:ASP80 4.2 18.4 1.0
O X:HOH234 4.5 22.0 1.0
O X:HOH298 4.9 46.1 1.0

Reference:

S.Abe, J.Niemeyer, M.Abe, Y.Takezawa, T.Ueno, T.Hikage, G.Erker, Y.Watanabe. Control of the Coordination Structure of Organometallic Palladium Complexes in An Apo-Ferritin Cage. J.Am.Chem.Soc. V. 130 10512 2008.
ISSN: ISSN 0002-7863
PubMed: 18636721
DOI: 10.1021/JA802463A
Page generated: Wed Oct 28 10:00:47 2020
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