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Cadmium in PDB 2zgg: Asn-Hydroxylation Stabilises the Ankyrin Repeat Domain Fold

Protein crystallography data

The structure of Asn-Hydroxylation Stabilises the Ankyrin Repeat Domain Fold, PDB code: 2zgg was solved by M.A.Mcdonough, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.91 / 2.00
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 48.959, 48.959, 79.042, 90.00, 90.00, 120.00
R / Rfree (%) 21.2 / 23.8

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Asn-Hydroxylation Stabilises the Ankyrin Repeat Domain Fold (pdb code 2zgg). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Asn-Hydroxylation Stabilises the Ankyrin Repeat Domain Fold, PDB code: 2zgg:

Cadmium binding site 1 out of 1 in 2zgg

Go back to Cadmium Binding Sites List in 2zgg
Cadmium binding site 1 out of 1 in the Asn-Hydroxylation Stabilises the Ankyrin Repeat Domain Fold


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Asn-Hydroxylation Stabilises the Ankyrin Repeat Domain Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd401

b:22.3
occ:1.00
OE1 A:GLN36 2.1 20.1 1.0
OE1 A:GLU30 2.3 19.2 1.0
OE1 A:GLU39 2.4 28.6 1.0
OE2 A:GLU39 2.6 25.9 1.0
OE2 A:GLU30 2.8 22.4 1.0
CD A:GLU39 2.8 28.2 1.0
CD A:GLU30 2.9 20.8 1.0
CD A:GLN36 3.0 21.5 1.0
NE2 A:GLN36 3.4 24.0 1.0
O A:HOH1024 3.7 24.4 1.0
CG A:GLN36 4.3 19.6 1.0
CG A:GLU39 4.4 24.5 1.0
CG A:GLU30 4.4 18.3 1.0
CA A:ALA31 4.5 18.3 1.0
CB A:GLN36 4.7 19.8 1.0
N A:ALA31 4.7 16.3 1.0
CB A:ALA34 4.8 18.1 1.0
CB A:ALA31 4.9 15.3 1.0
O A:GLU30 4.9 17.4 1.0
C A:GLU30 4.9 14.4 1.0
CB A:GLU39 5.0 22.4 1.0

Reference:

L.Kelly, M.A.Mcdonough, M.L.Coleman, P.J.Ratcliffe, C.J.Schofield. Asparagine Beta-Hydroxylation Stabilizes the Ankyrin Repeat Domain Fold Mol Biosyst V. 5 52 2009.
ISSN: ISSN 1742-206X
PubMed: 19081931
DOI: 10.1039/B815271C
Page generated: Fri Aug 28 13:20:05 2020
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