Cadmium in PDB 3af7: Crystal Structure of 25PD(Allyl)/Apo-Fr

The structure of Crystal Structure of 25PD(Allyl)/Apo-Fr, PDB code: 3af7 was solved by S.Abe, T.Hikage, Y.Watanabe, S.Kitagawa, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.17 / 1.58
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	181.520, 181.520, 181.520, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 21.2

The structure of Crystal Structure of 25PD(Allyl)/Apo-Fr also contains other interesting chemical elements:

Palladium

(Pd)

5 atoms

The binding sites of Cadmium atom in the Crystal Structure of 25PD(Allyl)/Apo-Fr (pdb code 3af7). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of 25PD(Allyl)/Apo-Fr, PDB code: 3af7:

Cadmium binding site 1 out of 1 in the Crystal Structure of 25PD(Allyl)/Apo-Fr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of 25PD(Allyl)/Apo-Fr within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd175 b:27.3 occ:0.50 OD2 X:ASP80 2.5 21.3 1.0 OD1 X:ASP80 2.7 18.5 1.0 CG X:ASP80 2.9 15.8 1.0 CB X:ASP80 4.4 15.5 1.0 O X:HOH245 4.7 23.4 1.0

S.Abe, T.Hikage, Y.Watanabe, S.Kitagawa, T.Ueno. Mechanism of Accumulation and Incorporation of Organometallic Pd Complexes Into the Protein Nanocage of Apo-Ferritin. Inorg.Chem. V. 49 6967 2010.
ISSN: ISSN 0020-1669
PubMed: 20586408
DOI: 10.1021/IC1003758