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Cadmium in PDB 3afp: Crystal Structure of the Single-Stranded Dna Binding Protein From Mycobacterium Leprae (Form I)

Protein crystallography data

The structure of Crystal Structure of the Single-Stranded Dna Binding Protein From Mycobacterium Leprae (Form I), PDB code: 3afp was solved by P.S.Kaushal, P.Singh, A.Sharma, K.Muniyappa, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.14 / 2.05
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.957, 78.957, 80.213, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 23.2

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of the Single-Stranded Dna Binding Protein From Mycobacterium Leprae (Form I) (pdb code 3afp). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of the Single-Stranded Dna Binding Protein From Mycobacterium Leprae (Form I), PDB code: 3afp:

Cadmium binding site 1 out of 1 in 3afp

Go back to Cadmium Binding Sites List in 3afp
Cadmium binding site 1 out of 1 in the Crystal Structure of the Single-Stranded Dna Binding Protein From Mycobacterium Leprae (Form I)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Single-Stranded Dna Binding Protein From Mycobacterium Leprae (Form I) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1001

b:39.6
occ:1.00
OE1 B:GLU62 2.4 34.1 1.0
OE1 B:GLU65 2.4 29.2 1.0
OE2 B:GLU65 2.4 31.6 1.0
OE2 B:GLU62 2.6 35.9 1.0
CD B:GLU65 2.7 32.0 1.0
O B:HOH217 2.8 49.3 1.0
CD B:GLU62 2.8 35.4 1.0
O B:HOH216 4.1 34.5 1.0
CG B:GLU65 4.2 32.4 1.0
CG B:GLU62 4.4 35.2 1.0
CA B:GLU62 4.8 31.6 1.0
CB B:GLU65 5.0 30.3 1.0

Reference:

P.S.Kaushal, P.Singh, A.Sharma, K.Muniyappa, M.Vijayan. X-Ray and Molecular-Dynamics Studies on Mycobacterium Leprae Single-Stranded Dna-Binding Protein and Comparison with Other Eubacterial Ssb Structures Acta Crystallogr.,Sect.D V. 66 1048 2010.
ISSN: ISSN 0907-4449
PubMed: 20944238
DOI: 10.1107/S0907444910032208
Page generated: Fri Aug 28 13:21:21 2020
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