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Cadmium in PDB 3cfk: Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form

Protein crystallography data

The structure of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form, PDB code: 3cfk was solved by E.W.Debler, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.67 / 2.60
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 81.069, 106.299, 116.109, 89.89, 90.04, 89.48
R / Rfree (%) 22.1 / 24.4

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form (pdb code 3cfk). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 23 binding sites of Cadmium where determined in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form, PDB code: 3cfk:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10; 11; 12; 13; 14; 15; 16; 17; 18; 19; 20; 21; 22; 23;

Cadmium binding site 1 out of 23 in 3cfk

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Cadmium binding site 1 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cd301

b:77.0
occ:0.80
O L:HOH344 2.3 47.2 1.0
O L:HOH341 2.7 32.4 1.0
O J:GLY57 2.7 58.1 1.0
OE1 L:GLU81 2.8 58.8 1.0
NE2 L:GLN79 2.9 57.4 1.0
OE2 L:GLU81 3.3 60.1 1.0
CD L:GLU81 3.4 59.4 1.0
OG1 L:THR80 3.6 58.2 1.0
C J:GLY57 3.7 57.6 1.0
CA J:GLY57 3.9 57.5 1.0
CD L:GLN79 4.1 60.7 1.0
CB L:GLN79 4.4 58.2 1.0
CG L:GLN79 4.5 59.7 1.0
N L:THR80 4.5 57.9 1.0
CB L:THR80 4.9 57.6 1.0
CG L:GLU81 4.9 58.3 1.0
N J:VAL58 4.9 57.9 1.0

Cadmium binding site 2 out of 23 in 3cfk

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Cadmium binding site 2 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cd319

b:98.4
occ:0.50
O L:HOH330 2.3 38.0 1.0
O J:HOH332 2.4 50.1 1.0
O L:HOH335 2.5 59.7 1.0
O J:HOH324 2.6 36.9 1.0
OE2 L:GLU81 4.0 60.1 1.0
OE2 J:GLU81 4.2 60.3 1.0
O J:HOH341 4.4 51.6 1.0
CG J:GLU81 4.6 58.1 1.0
NH2 J:ARG61 4.7 57.6 1.0
OE1 L:GLN79 4.7 62.8 1.0
CG L:GLU81 4.7 58.3 1.0
NH1 J:ARG61 4.8 58.0 1.0
NH1 L:ARG61 4.8 58.1 1.0
CD L:GLU81 4.8 59.4 1.0
CD J:GLU81 4.9 59.4 1.0
NH2 L:ARG61 4.9 57.6 1.0
OE1 J:GLN79 5.0 59.2 1.0

Cadmium binding site 3 out of 23 in 3cfk

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Cadmium binding site 3 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cd323

b:93.0
occ:0.60
ND2 L:ASN138 2.1 58.4 1.0
NE2 H:HIS172 2.3 59.0 1.0
O L:HOH333 2.7 63.5 1.0
CG L:ASN138 2.8 59.2 1.0
OD1 L:ASN138 2.9 60.0 1.0
CE1 H:HIS172 3.0 58.5 1.0
CD2 H:HIS172 3.5 58.1 1.0
OD1 L:ASN137 3.9 60.8 1.0
O L:HOH337 3.9 44.5 1.0
OE2 K:GLU1 4.1 55.8 1.0
ND2 L:ASN137 4.1 59.1 1.0
ND1 H:HIS172 4.2 57.9 1.0
CB L:ASN138 4.3 57.9 1.0
CD K:GLU1 4.3 58.8 1.0
OD2 L:ASP170 4.3 60.6 1.0
OG L:SER174 4.4 58.0 1.0
CG L:ASN137 4.4 58.8 1.0
CG H:HIS172 4.5 58.0 1.0
N K:GLU1 4.6 57.0 1.0
OE1 K:GLU1 4.7 59.7 1.0
CG K:GLU1 4.7 58.8 1.0
OG1 L:THR172 4.8 58.1 1.0
OD2 L:ASP167 4.8 59.7 1.0
CA L:ASN138 4.8 57.7 1.0
N L:ASN138 4.9 57.8 1.0
CB K:GLU1 5.0 57.3 1.0

Cadmium binding site 4 out of 23 in 3cfk

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Cadmium binding site 4 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd317

b:90.7
occ:0.80
O A:HOH416 2.0 47.7 1.0
O M:GLY57 2.3 58.3 1.0
NE2 A:GLN79 2.5 55.1 1.0
OE2 A:GLU81 2.6 60.2 1.0
O A:HOH411 3.0 41.7 1.0
OE1 A:GLU81 3.1 58.7 1.0
CD A:GLU81 3.2 59.3 1.0
C M:GLY57 3.3 57.7 1.0
CA M:GLY57 3.7 57.5 1.0
CD A:GLN79 3.8 59.0 1.0
OG1 A:THR80 4.4 57.8 1.0
CG A:GLN79 4.5 58.5 1.0
CB A:GLN79 4.5 58.0 1.0
N M:VAL58 4.5 57.9 1.0
O3 A:GOL402 4.6 67.9 1.0
CG A:GLU81 4.7 58.2 1.0
OE1 A:GLN79 4.7 58.6 1.0
CA M:VAL58 5.0 57.8 1.0

Cadmium binding site 5 out of 23 in 3cfk

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Cadmium binding site 5 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd318

b:96.5
occ:0.60
O A:HOH403 2.2 73.8 1.0
OD2 A:ASP69 3.4 59.8 1.0
CG A:ASP69 3.8 58.8 1.0
CB A:ASP69 3.9 58.1 1.0
NE A:ARG70 4.3 57.9 1.0
N A:ASP69 4.5 57.9 1.0
NH2 A:ARG70 4.6 57.6 1.0
OD1 A:ASP69 4.6 60.0 1.0
CZ A:ARG70 4.9 57.8 1.0
CA A:ASP69 4.9 57.9 1.0

Cadmium binding site 6 out of 23 in 3cfk

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Cadmium binding site 6 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd306

b:92.1
occ:0.75
OE1 B:GLU226 2.6 65.0 1.0
CD B:GLU226 2.6 63.3 1.0
OE2 B:GLU226 2.7 66.9 1.0
OE2 H:GLU226 2.8 62.8 1.0
CD H:GLU226 2.8 62.9 1.0
OE1 H:GLU226 3.0 64.6 1.0
CG B:GLU226 3.5 62.4 1.0
CG H:GLU226 3.7 62.3 1.0
NZ B:LYS222 4.0 58.2 1.0
CE B:LYS222 4.7 57.8 1.0
CB B:GLU226 4.7 61.5 1.0
CB H:GLU226 4.9 62.1 1.0

Cadmium binding site 7 out of 23 in 3cfk

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Cadmium binding site 7 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd308

b:76.1
occ:0.75
O G:GLY57 2.5 58.1 1.0
O C:HOH322 2.6 34.9 1.0
NE2 C:GLN79 2.8 58.5 1.0
OE1 C:GLU81 3.0 58.7 1.0
OE2 C:GLU81 3.3 60.3 1.0
C G:GLY57 3.4 57.6 1.0
CD C:GLU81 3.5 59.4 1.0
OG1 C:THR80 3.7 57.9 1.0
CA G:GLY57 3.8 57.6 1.0
CD C:GLN79 3.8 59.7 1.0
CG C:GLN79 4.5 58.7 1.0
OE1 C:GLN79 4.6 61.7 1.0
CB C:GLN79 4.6 58.6 1.0
N G:VAL58 4.6 57.8 1.0
N C:THR80 4.7 57.9 1.0
CB C:THR80 5.0 57.6 1.0

Cadmium binding site 8 out of 23 in 3cfk

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Cadmium binding site 8 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd309

b:94.2
occ:0.50
ND2 C:ASN138 1.8 58.5 1.0
NE2 D:HIS172 2.2 58.9 1.0
CG C:ASN138 2.8 59.1 1.0
CE1 D:HIS172 2.8 58.4 1.0
OD1 C:ASN138 3.0 60.2 1.0
CD2 D:HIS172 3.4 58.0 1.0
O I:HOH238 3.7 47.6 1.0
OD1 C:ASN137 3.7 60.6 1.0
OG C:SER174 4.0 58.1 1.0
ND1 D:HIS172 4.1 57.9 1.0
CB C:ASN138 4.1 57.8 1.0
OD2 C:ASP170 4.2 60.4 1.0
ND2 C:ASN137 4.2 59.0 1.0
CG C:ASN137 4.3 58.9 1.0
OG1 C:THR172 4.3 58.0 1.0
CG D:HIS172 4.4 58.0 1.0
CA C:ASN138 4.6 57.8 1.0
OD2 C:ASP167 4.6 59.6 1.0
N C:ASN138 4.6 57.7 1.0
OE2 I:GLU1 4.8 58.2 1.0
N I:GLU1 4.8 57.3 1.0

Cadmium binding site 9 out of 23 in 3cfk

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Cadmium binding site 9 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd310

b:48.0
occ:1.00
ND2 C:ASN152 2.3 56.9 1.0
O C:HOH341 2.3 28.8 1.0
O C:HOH316 2.5 32.2 1.0
O C:HOH313 2.7 12.3 1.0
O C:HOH317 2.8 23.0 1.0
CG C:ASN152 3.2 57.5 1.0
OD1 C:ASN152 3.4 57.3 1.0
CB C:ASN152 4.6 57.4 1.0
O C:HOH323 4.7 40.5 1.0
CA C:ASN152 4.9 57.7 1.0

Cadmium binding site 10 out of 23 in 3cfk

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Cadmium binding site 10 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd311

b:84.7
occ:0.70
OD2 D:ASP65 2.3 60.2 1.0
CG D:ASP65 3.1 61.0 1.0
CB D:ASP65 3.5 61.5 1.0
OD1 D:ASP65 4.2 61.2 1.0
CE D:LYS64 4.3 62.5 1.0
CD D:LYS64 4.4 62.3 1.0
NZ D:LYS64 4.4 62.8 1.0
N D:ASP65 4.6 62.2 1.0
CA D:ASP65 4.7 61.8 1.0
CG D:LYS64 4.8 62.2 1.0
CB D:LYS64 4.8 62.2 1.0

Cadmium binding site 11 out of 23 in 3cfk

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Cadmium binding site 11 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 11 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd312

b:86.4
occ:0.55
OE2 P:GLU226 2.4 64.1 1.0
OE1 P:GLU226 2.4 65.9 1.0
OE1 D:GLU226 2.4 70.0 1.0
CD D:GLU226 2.5 64.8 1.0
OE2 D:GLU226 2.6 68.9 1.0
CD P:GLU226 2.7 63.5 1.0
CG D:GLU226 3.6 62.8 1.0
NZ D:LYS222 3.8 58.1 1.0
CG P:GLU226 4.2 62.4 1.0
CE D:LYS222 4.6 57.8 1.0
CB D:GLU226 4.7 61.9 1.0

Cadmium binding site 12 out of 23 in 3cfk

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Cadmium binding site 12 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 12 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cd314

b:79.9
occ:0.70
O O:GLY57 2.4 58.1 1.0
O E:HOH407 2.7 55.6 1.0
OE2 E:GLU81 2.8 60.3 1.0
OE1 E:GLU81 2.9 58.7 1.0
NE2 E:GLN79 3.0 56.3 1.0
CD E:GLU81 3.2 59.3 1.0
C O:GLY57 3.4 57.6 1.0
CA O:GLY57 3.7 57.5 1.0
OG1 E:THR80 3.9 58.0 1.0
CD E:GLN79 4.2 59.0 1.0
CB E:GLN79 4.5 58.0 1.0
N O:VAL58 4.6 58.0 1.0
CG E:GLN79 4.6 58.6 1.0
CG E:GLU81 4.7 58.1 1.0
N E:THR80 4.9 57.9 1.0
O3 E:GOL403 4.9 49.2 1.0

Cadmium binding site 13 out of 23 in 3cfk

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Cadmium binding site 13 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 13 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cd322

b:0.5
occ:0.60
NE2 F:HIS172 1.8 58.8 1.0
ND2 E:ASN138 2.2 58.5 1.0
CE1 F:HIS172 2.8 58.6 1.0
CD2 F:HIS172 2.9 57.9 1.0
CG E:ASN138 3.0 59.2 1.0
O E:HOH410 3.0 54.2 1.0
OD1 E:ASN138 3.1 60.0 1.0
OD1 E:ASN137 3.4 60.4 1.0
ND2 E:ASN137 3.9 59.0 1.0
ND1 F:HIS172 3.9 57.8 1.0
CG F:HIS172 4.0 58.1 1.0
CG E:ASN137 4.0 58.7 1.0
OG E:SER174 4.1 58.2 1.0
CB E:ASN138 4.4 57.8 1.0
OD2 E:ASP170 4.8 60.3 1.0
N E:ASN138 4.8 57.9 1.0
N P:GLU1 4.9 58.1 1.0
CA E:ASN138 4.9 57.8 1.0
OG1 E:THR172 4.9 58.3 1.0

Cadmium binding site 14 out of 23 in 3cfk

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Cadmium binding site 14 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 14 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cd307

b:75.2
occ:0.80
O G:HOH338 2.6 47.6 1.0
O C:GLY57 2.7 58.1 1.0
OE1 G:GLU81 2.8 58.7 1.0
O G:HOH335 2.8 35.4 1.0
NE2 G:GLN79 3.1 64.0 1.0
OE2 G:GLU81 3.3 60.0 1.0
CD G:GLU81 3.4 59.4 1.0
OG1 G:THR80 3.5 58.2 1.0
C C:GLY57 3.7 57.6 1.0
CA C:GLY57 4.0 57.5 1.0
CD G:GLN79 4.3 61.0 1.0
CB G:GLN79 4.4 58.4 1.0
N G:THR80 4.5 57.9 1.0
CG G:GLN79 4.7 59.7 1.0
CB G:THR80 4.8 57.5 1.0
N C:VAL58 4.9 57.9 1.0
CG G:GLU81 4.9 58.2 1.0

Cadmium binding site 15 out of 23 in 3cfk

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Cadmium binding site 15 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 15 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cd315

b:97.3
occ:0.60
ND2 G:ASN138 2.1 58.5 1.0
NE2 I:HIS172 2.3 59.0 1.0
CG G:ASN138 2.9 59.0 1.0
CE1 I:HIS172 3.0 58.5 1.0
OD1 G:ASN138 3.0 60.0 1.0
CD2 I:HIS172 3.5 58.0 1.0
OD1 G:ASN137 4.0 60.7 1.0
OE2 D:GLU1 4.0 55.3 1.0
O G:HOH329 4.0 39.7 1.0
ND1 I:HIS172 4.2 57.9 1.0
OD2 G:ASP170 4.2 60.5 1.0
CB G:ASN138 4.3 57.9 1.0
ND2 G:ASN137 4.3 59.0 1.0
CD D:GLU1 4.3 59.1 1.0
OG G:SER174 4.4 58.2 1.0
CG I:HIS172 4.5 58.0 1.0
CG G:ASN137 4.5 58.8 1.0
N D:GLU1 4.6 57.4 1.0
OG1 G:THR172 4.6 58.4 1.0
OD2 G:ASP167 4.6 59.8 1.0
CG D:GLU1 4.7 58.6 1.0
CA G:ASN138 4.8 57.7 1.0
N G:ASN138 4.9 57.8 1.0
OE1 D:GLU1 4.9 59.7 1.0

Cadmium binding site 16 out of 23 in 3cfk

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Cadmium binding site 16 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 16 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cd320

b:1.0
occ:0.50
O C:HOH319 2.3 35.5 1.0
O G:HOH327 2.6 35.1 1.0
O C:HOH329 2.7 53.8 1.0
O C:HOH343 3.6 47.8 1.0
OE2 C:GLU81 3.7 60.3 1.0
OE1 C:GLN79 4.1 61.7 1.0
OE2 G:GLU81 4.3 60.0 1.0
CG C:GLU81 4.4 58.1 1.0
CD C:GLU81 4.5 59.4 1.0
CG G:GLU81 4.6 58.2 1.0
NH2 G:ARG61 4.7 57.4 1.0
NH1 G:ARG61 4.9 58.2 1.0
CD G:GLU81 5.0 59.4 1.0

Cadmium binding site 17 out of 23 in 3cfk

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Cadmium binding site 17 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 17 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cd321

b:93.7
occ:0.70
OE1 G:GLU17 2.2 58.5 1.0
O G:HOH347 2.4 62.9 1.0
OE2 G:GLU17 2.6 59.5 1.0
CD G:GLU17 2.7 58.9 1.0
OG G:SER14 2.9 58.4 1.0
N G:SER14 3.8 57.7 1.0
CB G:SER14 3.8 57.7 1.0
CG G:GLU17 4.2 58.1 1.0
CA G:SER14 4.5 57.8 1.0
C G:THR13 4.6 57.8 1.0
CA G:THR13 4.7 57.9 1.0
CD G:LYS107 4.8 57.9 1.0
NZ G:LYS107 4.9 58.6 1.0
CB G:GLU17 5.0 57.5 1.0

Cadmium binding site 18 out of 23 in 3cfk

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Cadmium binding site 18 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 18 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cd302

b:97.2
occ:0.60
ND2 J:ASN138 1.9 58.3 1.0
NE2 K:HIS172 2.1 58.7 1.0
CE1 K:HIS172 2.7 58.4 1.0
CG J:ASN138 2.8 59.2 1.0
OD1 J:ASN138 3.0 60.2 1.0
CD2 K:HIS172 3.4 57.8 1.0
OD1 J:ASN137 3.7 60.5 1.0
ND1 K:HIS172 4.0 58.1 1.0
OG J:SER174 4.0 58.0 1.0
CB J:ASN138 4.1 57.9 1.0
ND2 J:ASN137 4.2 59.0 1.0
OD2 J:ASP170 4.3 60.4 1.0
CG K:HIS172 4.3 58.0 1.0
CG J:ASN137 4.3 58.9 1.0
OG1 J:THR172 4.4 58.2 1.0
CA J:ASN138 4.6 57.8 1.0
N J:ASN138 4.6 57.7 1.0
OD2 J:ASP167 4.7 59.8 1.0
N H:GLU1 4.9 60.2 1.0

Cadmium binding site 19 out of 23 in 3cfk

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Cadmium binding site 19 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


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Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 19 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cd303

b:52.7
occ:1.00
O J:HOH347 2.3 32.9 1.0
ND2 J:ASN152 2.4 56.8 1.0
O J:HOH351 2.5 41.4 1.0
O J:HOH320 2.7 18.0 1.0
O J:HOH322 2.8 22.7 1.0
CG J:ASN152 3.3 57.5 1.0
OD1 J:ASN152 3.4 57.5 1.0
CB J:ASN152 4.6 57.4 1.0
O J:HOH349 4.6 47.3 1.0
CA J:ASN152 4.9 57.7 1.0

Cadmium binding site 20 out of 23 in 3cfk

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Cadmium binding site 20 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 20 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cd316

b:86.9
occ:0.75
O L:GLY57 2.6 58.1 1.0
O J:HOH340 2.8 36.0 1.0
OE1 J:GLU81 2.9 58.8 1.0
NE2 J:GLN79 3.0 56.8 1.0
OE2 J:GLU81 3.2 60.3 1.0
CD J:GLU81 3.4 59.4 1.0
C L:GLY57 3.6 57.6 1.0
OG1 J:THR80 3.6 58.0 1.0
O J:HOH343 3.9 42.0 1.0
CA L:GLY57 3.9 57.6 1.0
CD J:GLN79 4.3 59.3 1.0
CB J:GLN79 4.6 58.3 1.0
N J:THR80 4.7 57.9 1.0
CG J:GLN79 4.8 58.7 1.0
N L:VAL58 4.8 57.8 1.0
CG J:GLU81 4.9 58.1 1.0
CB J:THR80 5.0 57.7 1.0

Cadmium binding site 21 out of 23 in 3cfk

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Cadmium binding site 21 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 21 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cd304

b:84.8
occ:0.85
OD2 K:ASP65 2.3 59.3 1.0
CG K:ASP65 3.1 60.1 1.0
CB K:ASP65 3.5 60.6 1.0
OD1 K:ASP65 4.0 58.8 1.0
CA K:ASP65 4.7 60.8 1.0
CD K:LYS64 4.8 61.0 1.0
N K:ASP65 4.8 61.0 1.0
CB K:LYS64 4.9 61.0 1.0
CE K:LYS64 5.0 60.6 1.0

Cadmium binding site 22 out of 23 in 3cfk

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Cadmium binding site 22 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 22 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cd305

b:95.7
occ:0.75
O A:GLY57 2.4 58.3 1.0
NE2 M:GLN79 2.4 55.0 1.0
OE2 M:GLU81 2.6 60.3 1.0
O M:HOH506 2.7 38.5 1.0
OE1 M:GLU81 2.9 58.6 1.0
CD M:GLU81 3.1 59.3 1.0
C A:GLY57 3.3 57.6 1.0
CD M:GLN79 3.5 59.3 1.0
CA A:GLY57 3.7 57.6 1.0
CG M:GLN79 4.1 58.9 1.0
OG1 M:THR80 4.3 58.1 1.0
OE1 M:GLN79 4.4 59.9 1.0
CB M:GLN79 4.4 58.5 1.0
N A:VAL58 4.5 58.0 1.0
CG M:GLU81 4.6 58.3 1.0
O1 A:GOL402 5.0 67.0 1.0
CA A:VAL58 5.0 57.7 1.0

Cadmium binding site 23 out of 23 in 3cfk

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Cadmium binding site 23 out of 23 in the Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 23 of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cd313

b:83.3
occ:0.75
O E:GLY57 2.3 58.3 1.0
NE2 O:GLN79 2.5 50.5 1.0
O O:HOH505 2.8 27.6 1.0
OE1 O:GLU81 2.9 58.9 1.0
OE2 O:GLU81 2.9 60.4 1.0
C E:GLY57 3.3 57.6 1.0
CD O:GLU81 3.3 59.4 1.0
CD O:GLN79 3.5 59.6 1.0
CA E:GLY57 3.5 57.5 1.0
OG1 O:THR80 3.8 58.0 1.0
CG O:GLN79 4.1 58.1 1.0
OE1 O:GLN79 4.4 63.1 1.0
CB O:GLN79 4.4 58.5 1.0
N E:VAL58 4.5 58.0 1.0
N O:THR80 4.7 58.0 1.0
CG O:GLU81 4.8 58.3 1.0
N E:GLY57 4.9 57.3 1.0
O E:HOH412 4.9 52.2 1.0

Reference:

E.W.Debler, R.Muller, D.Hilvert, I.A.Wilson. Conformational Isomerism Can Limit Antibody Catalysis. J.Biol.Chem. V. 283 16554 2008.
ISSN: ISSN 0021-9258
PubMed: 18417480
DOI: 10.1074/JBC.M710256200
Page generated: Wed Oct 28 10:02:14 2020
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