Chemical elements
  Cadmium
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    PDB 1a4k-1exq
    PDB 1f48-1ihu
    PDB 1ii0-1mhu
    PDB 1mms-1qvg
    PDB 1qy0-1wb6
    PDB 1wje-2avp
    PDB 2b3p-2j6e
    PDB 2jdz-2x05
    PDB 2x09-3ccj
    PDB 3ccl-3ggf
      3ccl
      3ccm
      3ccq
      3ccr
      3ccs
      3ccu
      3ccv
      3cd6
      3cel
      3cfk
      3cjk
      3cma
      3cme
      3cn6
      3cpw
      3cu7
      3cxc
      3d4c
      3die
      3dld
      3dtu
      3dze
      3eec
      3eig
      3f32
      3f33
      3f34
      3f35
      3f36
      3f37
      3f38
      3f39
      3fct
      3ffc
      3fgh
      3fi6
      3fqn
      3fqr
      3fqt
      3fqu
      3fqw
      3fqx
      3fye
      3fyi
      3g4s
      3g6e
      3g71
      3g7d
      3gbf
      3ggf
    PDB 3h1u-3p5v
    PDB 3p5w-8ice

Cadmium in the structure of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form (pdb 3cfk)






The binding sites of Cadmium atom in the structure of Crystal Structure of Catalytic Elimination Antibody 34E4, Triclinic Crystal Form (pdb code 3cfk). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 3cfk structure was solved by E.W.DEBLER, I.A.WILSON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)41.7-2.6
Space groupP1
a (A)81.069
b (A)106.299
c (A)116.109
alpha (°)89.89
beta (°)90.04
gamma (°)89.48
Rfactor (%)22.1
Rfree (%)24.4


Cadmium Binding Sites:

Cadmium binding site 1 out of 23 in 3cfk


Cadmium binding site 1 out of 23 in 3cfk
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stereopicture of Cadmium binding site 1 out of 23 in 3cfk
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: L: Gln79, L: Thr80, L: Glu81, J: Gly57, J: Val58, L: Hoh341, L: Hoh344,

conact list:


AtomAtomDistance (A)
CdNE2 L:Gln792.95
CdCB L:Gln794.41
CdCD L:Gln794.09
CdCG L:Gln794.47
CdN L:Thr804.51
CdCB L:Thr804.87
CdOG1 L:Thr803.56
CdOE1 L:Glu812.83
CdOE2 L:Glu813.32
CdCD L:Glu813.42
CdCG L:Glu814.89
CdO J:Gly572.74
CdC J:Gly573.69
CdCA J:Gly573.94
CdN J:Val584.91
CdO L:Hoh3412.73
CdO L:Hoh3442.33

interactive model:


Cadmium binding site 2 out of 23 in 3cfk


Cadmium binding site 2 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 2 out of 23 in 3cfk
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: L: Arg61, L: Gln79, L: Glu81, J: Arg61, J: Gln79, J: Glu81, L: Hoh330, L: Hoh335, J: Hoh324, J: Hoh332, J: Hoh341,

conact list:


AtomAtomDistance (A)
CdNH2 L:Arg614.92
CdNH1 L:Arg614.82
CdOE1 L:Gln794.72
CdOE2 L:Glu813.98
CdCD L:Glu814.84
CdCG L:Glu814.74
CdNH2 J:Arg614.67
CdNH1 J:Arg614.77
CdOE1 J:Gln794.98
CdOE2 J:Glu814.16
CdCD J:Glu814.87
CdCG J:Glu814.59
CdO L:Hoh3302.28
CdO L:Hoh3352.48
CdO J:Hoh3242.63
CdO J:Hoh3322.43
CdO J:Hoh3414.43

interactive model:


Cadmium binding site 3 out of 23 in 3cfk


Cadmium binding site 3 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 3 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: L: Asn137, L: Asn138, L: Asp167, L: Asp170, L: Thr172, L: Ser174, H: His172, K: Glu1, L: Hoh333, L: Hoh337,

conact list:


AtomAtomDistance (A)
CdND2 L:Asn1374.14
CdOD1 L:Asn1373.85
CdCG L:Asn1374.36
CdN L:Asn1384.88
CdCB L:Asn1384.26
CdND2 L:Asn1382.09
CdOD1 L:Asn1382.88
CdCG L:Asn1382.82
CdCA L:Asn1384.84
CdOD2 L:Asp1674.80
CdOD2 L:Asp1704.34
CdOG1 L:Thr1724.75
CdOG L:Ser1744.36
CdNE2 H:His1722.29
CdND1 H:His1724.21
CdCD2 H:His1723.45
CdCE1 H:His1722.99
CdCG H:His1724.46
CdN K:Glu14.55
CdOE1 K:Glu14.68
CdCB K:Glu14.96
CdOE2 K:Glu14.09
CdCD K:Glu14.27
CdCG K:Glu14.73
CdO L:Hoh3332.68
CdO L:Hoh3373.87

interactive model:


Cadmium binding site 4 out of 23 in 3cfk


Cadmium binding site 4 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 4 out of 23 in 3cfk
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gln79, A: Thr80, A: Glu81, M: Gly57, M: Val58, A: Gol402, A: Hoh411, A: Hoh416,

conact list:


AtomAtomDistance (A)
CdNE2 A:Gln792.48
CdOE1 A:Gln794.71
CdCB A:Gln794.46
CdCD A:Gln793.77
CdCG A:Gln794.45
CdOG1 A:Thr804.39
CdOE1 A:Glu813.05
CdOE2 A:Glu812.58
CdCD A:Glu813.17
CdCG A:Glu814.66
CdO M:Gly572.34
CdC M:Gly573.32
CdCA M:Gly573.69
CdN M:Val584.51
CdCA M:Val584.95
CdO3 A:Gol4024.58
CdO A:Hoh4113.00
CdO A:Hoh4162.01

interactive model:


Cadmium binding site 5 out of 23 in 3cfk


Cadmium binding site 5 out of 23 in 3cfk
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stereopicture of Cadmium binding site 5 out of 23 in 3cfk
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp69, A: Arg70, A: Hoh403,

conact list:


AtomAtomDistance (A)
CdN A:Asp694.55
CdCB A:Asp693.86
CdOD2 A:Asp693.42
CdOD1 A:Asp694.58
CdCG A:Asp693.76
CdCA A:Asp694.89
CdCZ A:Arg704.85
CdNE A:Arg704.30
CdNH2 A:Arg704.58
CdO A:Hoh4032.19

interactive model:


Cadmium binding site 6 out of 23 in 3cfk


Cadmium binding site 6 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 6 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Glu226, B: Lys222, B: Glu226,

conact list:


AtomAtomDistance (A)
CdOE1 H:Glu2263.00
CdCB H:Glu2264.86
CdOE2 H:Glu2262.79
CdCD H:Glu2262.85
CdCG H:Glu2263.71
CdCE B:Lys2224.69
CdNZ B:Lys2224.03
CdOE1 B:Glu2262.59
CdCB B:Glu2264.69
CdOE2 B:Glu2262.73
CdCD B:Glu2262.60
CdCG B:Glu2263.48

interactive model:


Cadmium binding site 7 out of 23 in 3cfk


Cadmium binding site 7 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 7 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Gln79, C: Thr80, C: Glu81, G: Gly57, G: Val58, C: Hoh322,

conact list:


AtomAtomDistance (A)
CdNE2 C:Gln792.78
CdOE1 C:Gln794.60
CdCB C:Gln794.62
CdCD C:Gln793.82
CdCG C:Gln794.53
CdN C:Thr804.70
CdCB C:Thr805.00
CdOG1 C:Thr803.66
CdOE1 C:Glu813.03
CdOE2 C:Glu813.28
CdCD C:Glu813.54
CdO G:Gly572.46
CdC G:Gly573.44
CdCA G:Gly573.80
CdN G:Val584.62
CdO C:Hoh3222.57

interactive model:


Cadmium binding site 8 out of 23 in 3cfk


Cadmium binding site 8 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 8 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Asn137, C: Asn138, C: Asp167, C: Asp170, C: Thr172, C: Ser174, D: His172, I: Glu1, I: Hoh238,

conact list:


AtomAtomDistance (A)
CdND2 C:Asn1374.25
CdOD1 C:Asn1373.74
CdCG C:Asn1374.34
CdN C:Asn1384.64
CdCB C:Asn1384.12
CdND2 C:Asn1381.82
CdOD1 C:Asn1383.00
CdCG C:Asn1382.75
CdCA C:Asn1384.59
CdOD2 C:Asp1674.64
CdOD2 C:Asp1704.22
CdOG1 C:Thr1724.34
CdOG C:Ser1744.05
CdNE2 D:His1722.19
CdND1 D:His1724.05
CdCD2 D:His1723.42
CdCE1 D:His1722.81
CdCG D:His1724.37
CdN I:Glu14.84
CdOE2 I:Glu14.83
CdO I:Hoh2383.71

interactive model:


Cadmium binding site 9 out of 23 in 3cfk


Cadmium binding site 9 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 9 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Asn152, C: Hoh313, C: Hoh316, C: Hoh317, C: Hoh323, C: Hoh341,

conact list:


AtomAtomDistance (A)
CdCB C:Asn1524.56
CdND2 C:Asn1522.29
CdOD1 C:Asn1523.36
CdCG C:Asn1523.19
CdCA C:Asn1524.85
CdO C:Hoh3132.67
CdO C:Hoh3162.50
CdO C:Hoh3172.79
CdO C:Hoh3234.73
CdO C:Hoh3412.30

interactive model:


Cadmium binding site 10 out of 23 in 3cfk


Cadmium binding site 10 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 10 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Lys64, D: Asp65,

conact list:


AtomAtomDistance (A)
CdCB D:Lys644.83
CdCE D:Lys644.32
CdCD D:Lys644.36
CdCG D:Lys644.78
CdNZ D:Lys644.43
CdN D:Asp654.62
CdCB D:Asp653.54
CdOD2 D:Asp652.27
CdOD1 D:Asp654.17
CdCG D:Asp653.14
CdCA D:Asp654.69

interactive model:


Cadmium binding site 11 out of 23 in 3cfk


Cadmium binding site 11 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 11 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Lys222, D: Glu226, P: Glu226,

conact list:


AtomAtomDistance (A)
CdCE D:Lys2224.59
CdNZ D:Lys2223.79
CdOE1 D:Glu2262.41
CdCB D:Glu2264.66
CdOE2 D:Glu2262.64
CdCD D:Glu2262.54
CdCG D:Glu2263.56
CdOE1 P:Glu2262.37
CdOE2 P:Glu2262.36
CdCD P:Glu2262.68
CdCG P:Glu2264.21

interactive model:


Cadmium binding site 12 out of 23 in 3cfk


Cadmium binding site 12 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 12 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Gln79, E: Thr80, E: Glu81, O: Gly57, O: Val58, E: Gol403, E: Hoh407,

conact list:


AtomAtomDistance (A)
CdNE2 E:Gln792.96
CdCB E:Gln794.46
CdCD E:Gln794.19
CdCG E:Gln794.64
CdN E:Thr804.86
CdOG1 E:Thr803.91
CdOE1 E:Glu812.87
CdOE2 E:Glu812.84
CdCD E:Glu813.21
CdCG E:Glu814.72
CdO O:Gly572.39
CdC O:Gly573.36
CdCA O:Gly573.68
CdN O:Val584.58
CdO3 E:Gol4034.93
CdO E:Hoh4072.70

interactive model:


Cadmium binding site 13 out of 23 in 3cfk


Cadmium binding site 13 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 13 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Asn137, E: Asn138, E: Asp170, E: Thr172, E: Ser174, F: His172, P: Glu1, E: Hoh410,

conact list:


AtomAtomDistance (A)
CdND2 E:Asn1373.90
CdOD1 E:Asn1373.39
CdCG E:Asn1374.01
CdN E:Asn1384.82
CdCB E:Asn1384.44
CdND2 E:Asn1382.15
CdOD1 E:Asn1383.07
CdCG E:Asn1382.99
CdCA E:Asn1384.93
CdOD2 E:Asp1704.78
CdOG1 E:Thr1724.93
CdOG E:Ser1744.06
CdNE2 F:His1721.84
CdND1 F:His1723.90
CdCD2 F:His1722.92
CdCE1 F:His1722.76
CdCG F:His1724.00
CdN P:Glu14.90
CdO E:Hoh4102.99

interactive model:


Cadmium binding site 14 out of 23 in 3cfk


Cadmium binding site 14 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 14 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Gly57, C: Val58, G: Gln79, G: Thr80, G: Glu81, G: Hoh335, G: Hoh338,

conact list:


AtomAtomDistance (A)
CdO C:Gly572.72
CdC C:Gly573.69
CdCA C:Gly574.00
CdN C:Val584.89
CdNE2 G:Gln793.13
CdCB G:Gln794.43
CdCD G:Gln794.32
CdCG G:Gln794.69
CdN G:Thr804.48
CdCB G:Thr804.80
CdOG1 G:Thr803.47
CdOE1 G:Glu812.76
CdOE2 G:Glu813.30
CdCD G:Glu813.40
CdCG G:Glu814.89
CdO G:Hoh3352.77
CdO G:Hoh3382.60

interactive model:


Cadmium binding site 15 out of 23 in 3cfk


Cadmium binding site 15 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 15 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Glu1, G: Asn137, G: Asn138, G: Asp167, G: Asp170, G: Thr172, G: Ser174, I: His172, G: Hoh329,

conact list:


AtomAtomDistance (A)
CdN D:Glu14.57
CdOE1 D:Glu14.92
CdOE2 D:Glu14.00
CdCD D:Glu14.33
CdCG D:Glu14.69
CdND2 G:Asn1374.33
CdOD1 G:Asn1373.99
CdCG G:Asn1374.51
CdN G:Asn1384.88
CdCB G:Asn1384.26
CdND2 G:Asn1382.06
CdOD1 G:Asn1383.01
CdCG G:Asn1382.88
CdCA G:Asn1384.81
CdOD2 G:Asp1674.64
CdOD2 G:Asp1704.23
CdOG1 G:Thr1724.59
CdOG G:Ser1744.35
CdNE2 I:His1722.32
CdND1 I:His1724.20
CdCD2 I:His1723.53
CdCE1 I:His1722.96
CdCG I:His1724.50
CdO G:Hoh3294.03

interactive model:


Cadmium binding site 16 out of 23 in 3cfk


Cadmium binding site 16 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 16 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Gln79, C: Glu81, G: Arg61, G: Glu81, C: Hoh319, C: Hoh329, C: Hoh343, G: Hoh327,

conact list:


AtomAtomDistance (A)
CdOE1 C:Gln794.13
CdOE2 C:Glu813.68
CdCD C:Glu814.47
CdCG C:Glu814.36
CdNH2 G:Arg614.71
CdNH1 G:Arg614.92
CdOE2 G:Glu814.29
CdCD G:Glu814.96
CdCG G:Glu814.58
CdO C:Hoh3192.27
CdO C:Hoh3292.67
CdO C:Hoh3433.60
CdO G:Hoh3272.64

interactive model:


Cadmium binding site 17 out of 23 in 3cfk


Cadmium binding site 17 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 17 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: G: Thr13, G: Ser14, G: Glu17, G: Lys107, G: Hoh347,

conact list:


AtomAtomDistance (A)
CdC G:Thr134.60
CdCA G:Thr134.68
CdN G:Ser143.82
CdCB G:Ser143.83
CdOG G:Ser142.90
CdCA G:Ser144.46
CdOE1 G:Glu172.16
CdCB G:Glu174.96
CdOE2 G:Glu172.57
CdCD G:Glu172.68
CdCG G:Glu174.22
CdCD G:Lys1074.80
CdNZ G:Lys1074.94
CdO G:Hoh3472.40

interactive model:


Cadmium binding site 18 out of 23 in 3cfk


Cadmium binding site 18 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 18 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Glu1, J: Asn137, J: Asn138, J: Asp167, J: Asp170, J: Thr172, J: Ser174, K: His172,

conact list:


AtomAtomDistance (A)
CdN H:Glu14.93
CdND2 J:Asn1374.19
CdOD1 J:Asn1373.73
CdCG J:Asn1374.31
CdN J:Asn1384.64
CdCB J:Asn1384.14
CdND2 J:Asn1381.87
CdOD1 J:Asn1382.99
CdCG J:Asn1382.77
CdCA J:Asn1384.60
CdOD2 J:Asp1674.71
CdOD2 J:Asp1704.27
CdOG1 J:Thr1724.39
CdOG J:Ser1743.98
CdNE2 K:His1722.11
CdND1 K:His1723.98
CdCD2 K:His1723.35
CdCE1 K:His1722.73
CdCG K:His1724.30

interactive model:


Cadmium binding site 19 out of 23 in 3cfk


Cadmium binding site 19 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 19 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Asn152, J: Hoh320, J: Hoh322, J: Hoh347, J: Hoh349, J: Hoh351,

conact list:


AtomAtomDistance (A)
CdCB J:Asn1524.62
CdND2 J:Asn1522.35
CdOD1 J:Asn1523.42
CdCG J:Asn1523.25
CdCA J:Asn1524.93
CdO J:Hoh3202.68
CdO J:Hoh3222.81
CdO J:Hoh3472.26
CdO J:Hoh3494.63
CdO J:Hoh3512.48

interactive model:


Cadmium binding site 20 out of 23 in 3cfk


Cadmium binding site 20 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 20 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: L: Gly57, L: Val58, J: Gln79, J: Thr80, J: Glu81, J: Hoh340, J: Hoh343,

conact list:


AtomAtomDistance (A)
CdO L:Gly572.61
CdC L:Gly573.59
CdCA L:Gly573.91
CdN L:Val584.80
CdNE2 J:Gln793.04
CdCB J:Gln794.64
CdCD J:Gln794.31
CdCG J:Gln794.79
CdN J:Thr804.75
CdCB J:Thr804.97
CdOG1 J:Thr803.60
CdOE1 J:Glu812.88
CdOE2 J:Glu813.17
CdCD J:Glu813.42
CdCG J:Glu814.94
CdO J:Hoh3402.83
CdO J:Hoh3433.87

interactive model:


Cadmium binding site 21 out of 23 in 3cfk


Cadmium binding site 21 out of 23 in 3cfk
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stereopicture of Cadmium binding site 21 out of 23 in 3cfk
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: K: Lys64, K: Asp65,

conact list:


AtomAtomDistance (A)
CdCB K:Lys644.88
CdCE K:Lys644.96
CdCD K:Lys644.76
CdN K:Asp654.76
CdCB K:Asp653.46
CdOD2 K:Asp652.31
CdOD1 K:Asp654.03
CdCG K:Asp653.05
CdCA K:Asp654.73

interactive model:


Cadmium binding site 22 out of 23 in 3cfk


Cadmium binding site 22 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 22 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gly57, A: Val58, M: Gln79, M: Thr80, M: Glu81, A: Gol402, M: Hoh506,

conact list:


AtomAtomDistance (A)
CdO A:Gly572.36
CdC A:Gly573.32
CdCA A:Gly573.66
CdN A:Val584.52
CdCA A:Val585.00
CdNE2 M:Gln792.37
CdOE1 M:Gln794.35
CdCB M:Gln794.42
CdCD M:Gln793.46
CdCG M:Gln794.10
CdOG1 M:Thr804.29
CdOE1 M:Glu812.94
CdOE2 M:Glu812.61
CdCD M:Glu813.13
CdCG M:Glu814.63
CdO1 A:Gol4024.97
CdO M:Hoh5062.68

interactive model:


Cadmium binding site 23 out of 23 in 3cfk


Cadmium binding site 23 out of 23 in 3cfk
Click to enlarge
stereopicture of Cadmium binding site 23 out of 23 in 3cfk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Cadmium in the PDB 3cfk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Gly57, E: Val58, O: Gln79, O: Thr80, O: Glu81, E: Hoh412, O: Hoh505,

conact list:


AtomAtomDistance (A)
CdO E:Gly572.35
CdN E:Gly574.92
CdC E:Gly573.26
CdCA E:Gly573.52
CdN E:Val584.49
CdNE2 O:Gln792.54
CdOE1 O:Gln794.36
CdCB O:Gln794.40
CdCD O:Gln793.49
CdCG O:Gln794.07
CdN O:Thr804.71
CdOG1 O:Thr803.82
CdOE1 O:Glu812.90
CdOE2 O:Glu812.94
CdCD O:Glu813.27
CdCG O:Glu814.76
CdO E:Hoh4124.93
CdO O:Hoh5052.82

interactive model:




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