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Cadmium in PDB 3dze: Crystal Structure of Bovine Coupling Factor B Bound with Cadmium

Enzymatic activity of Crystal Structure of Bovine Coupling Factor B Bound with Cadmium

All present enzymatic activity of Crystal Structure of Bovine Coupling Factor B Bound with Cadmium:
3.6.3.14;

Protein crystallography data

The structure of Crystal Structure of Bovine Coupling Factor B Bound with Cadmium, PDB code: 3dze was solved by J.K.Lee, R.M.Stroud, G.I.Belogrudov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 108.010, 49.924, 36.942, 90.00, 109.58, 90.00
R / Rfree (%) 12.9 / 15.5

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Bovine Coupling Factor B Bound with Cadmium (pdb code 3dze). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Bovine Coupling Factor B Bound with Cadmium, PDB code: 3dze:

Cadmium binding site 1 out of 1 in 3dze

Go back to Cadmium Binding Sites List in 3dze
Cadmium binding site 1 out of 1 in the Crystal Structure of Bovine Coupling Factor B Bound with Cadmium


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Bovine Coupling Factor B Bound with Cadmium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd177

b:21.0
occ:1.00
O A:HOH368 2.1 23.6 1.0
O A:HOH213 2.4 16.0 1.0
O A:HOH232 2.5 15.8 1.0
SG A:CYS101 2.6 10.2 1.0
N A:CYS101 3.0 9.4 1.0
C A:GLY100 3.5 9.7 1.0
CA A:CYS101 3.6 9.2 1.0
CB A:CYS101 3.6 9.3 1.0
CB A:SER74 3.7 13.2 1.0
CA A:SER74 3.8 12.0 1.0
CA A:GLY100 3.9 9.8 1.0
N A:SER74 4.0 11.0 1.0
N A:GLY100 4.2 9.2 1.0
CB A:GLU98 4.2 14.1 1.0
O A:GLY100 4.3 10.1 1.0
O A:GLU98 4.4 8.7 1.0
O A:HOH227 4.4 21.3 1.0
N A:GLU98 4.4 8.7 1.0
OE1 A:GLU98 4.5 20.6 1.0
CG A:GLU98 4.6 16.8 1.0
C A:GLU98 4.7 8.9 1.0
CA A:GLU98 4.7 9.1 1.0
CD A:GLU98 4.7 17.8 1.0
OG A:SER74 4.9 14.2 1.0

Reference:

J.K.Lee, G.I.Belogrudov, R.M.Stroud. Crystal Structure of Bovine Mitochondrial Factor B at 0.96-A Resolution. Proc.Natl.Acad.Sci.Usa V. 105 13379 2008.
ISSN: ISSN 0027-8424
PubMed: 18768789
DOI: 10.1073/PNAS.0805689105
Page generated: Fri Aug 28 13:33:49 2020
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