Cadmium in PDB 3fi6: Apo-H49AFR with High Content of Pd Ions

The structure of Apo-H49AFR with High Content of Pd Ions, PDB code: 3fi6 was solved by M.Abe, T.Ueno, K.Hirata, M.Suzuki, S.Abe, N.Shimizu, M.Yamaoto, M.Takata, Y.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.30 / 1.80
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.701, 180.701, 180.701, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 22.5

The structure of Apo-H49AFR with High Content of Pd Ions also contains other interesting chemical elements:

Palladium

(Pd)

8 atoms

The binding sites of Cadmium atom in the Apo-H49AFR with High Content of Pd Ions (pdb code 3fi6). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Apo-H49AFR with High Content of Pd Ions, PDB code: 3fi6:

Cadmium binding site 1 out of 1 in the Apo-H49AFR with High Content of Pd Ions


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Apo-H49AFR with High Content of Pd Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd209 b:19.1 occ:0.50 OD2 A:ASP80 2.1 21.8 1.0 OD1 A:ASP80 2.5 10.7 1.0 CG A:ASP80 2.7 16.5 1.0 CB A:ASP80 4.2 15.6 1.0 O A:HOH1025 4.4 14.1 1.0 O A:HOH1084 4.6 28.8 1.0

T.Ueno, M.Abe, K.Hirata, S.Abe, M.Suzuki, N.Shimizu, M.Yamamoto, M.Takata, Y.Watanabe. Process of Accumulation of Metal Ions on the Interior Surface of Apo-Ferritin: Crystal Structures of A Series of Apo-Ferritins Containing Variable Quantities of Pd(II) Ions J.Am.Chem.Soc. V. 131 5094 2009.
ISSN: ISSN 0002-7863
PubMed: 19317403
DOI: 10.1021/JA806688S