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PDB 3cn6-3haf »
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Cadmium in PDB 3g4s: Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit
Protein crystallography data
The structure of Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit, PDB code: 3g4s
was solved by
G.Gurel,
G.Blaha,
P.B.Moore,
T.A.Steitz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 49.84 / 3.20 |
| Space group | C 2 2 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 212.270, 299.840, 574.137, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 21.5 / 29 |
Other elements in 3g4s:
The structure of Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit also contains other interesting chemical elements:
| Strontium | (Sr) | 108 atoms |
| Magnesium | (Mg) | 93 atoms |
| Potassium | (K) | 1 atom |
| Chlorine | (Cl) | 22 atoms |
| Sodium | (Na) | 75 atoms |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit
(pdb code 3g4s). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit, PDB code: 3g4s:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Cadmium where determined in the Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit, PDB code: 3g4s:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
Cadmium binding site 1 out of 5 in 3g4s
Go back to
Cadmium Binding Sites List in 3g4s
Cadmium binding site 1 out
of 5 in the Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Cadmium binding site 2 out of 5 in 3g4s
Go back to
Cadmium Binding Sites List in 3g4s
Cadmium binding site 2 out
of 5 in the Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Cadmium binding site 3 out of 5 in 3g4s
Go back to
Cadmium Binding Sites List in 3g4s
Cadmium binding site 3 out
of 5 in the Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Cadmium binding site 4 out of 5 in 3g4s
Go back to
Cadmium Binding Sites List in 3g4s
Cadmium binding site 4 out
of 5 in the Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 4 of Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Cadmium binding site 5 out of 5 in 3g4s
Go back to
Cadmium Binding Sites List in 3g4s
Cadmium binding site 5 out
of 5 in the Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 5 of Co-Crystal Structure of Tiamulin Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Reference:
G.Gurel,
G.Blaha,
P.B.Moore,
T.A.Steitz.
U2504 Determines the Species Specificity of the A-Site Cleft Antibiotics: the Structures of Tiamulin, Homoharringtonine, and Bruceantin Bound to the Ribosome. J.Mol.Biol. V. 389 146 2009.
ISSN: ISSN 0022-2836
PubMed: 19362093
DOI: 10.1016/J.JMB.2009.04.005
Page generated: Thu Jul 10 12:37:44 2025
ISSN: ISSN 0022-2836
PubMed: 19362093
DOI: 10.1016/J.JMB.2009.04.005
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