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Cadmium in PDB 3kbm: Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form
Enzymatic activity of Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form
All present enzymatic activity of Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form:
5.3.1.5;
5.3.1.5;
Protein crystallography data
The structure of Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form, PDB code: 3kbm
was solved by
A.Y.Kovalevsky,
L.Hanson,
P.Langan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 20.00 / 2.00 |
| Space group | I 2 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 94.196, 99.430, 102.986, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 17.6 / 21.1 |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form
(pdb code 3kbm). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form, PDB code: 3kbm:
Jump to Cadmium binding site number: 1; 2;
In total 2 binding sites of Cadmium where determined in the Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form, PDB code: 3kbm:
Jump to Cadmium binding site number: 1; 2;
Cadmium binding site 1 out of 2 in 3kbm
Go back to
Cadmium Binding Sites List in 3kbm
Cadmium binding site 1 out
of 2 in the Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form within 5.0Å range:
|
Cadmium binding site 2 out of 2 in 3kbm
Go back to
Cadmium Binding Sites List in 3kbm
Cadmium binding site 2 out
of 2 in the Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of Room Temperature X-Ray Structure of D-Xylose Isomerase Complexed with 2CD(2+) Co-Factors and D12-D-Alpha-Glucose in the Cyclic Form within 5.0Å range:
|
Reference:
A.Y.Kovalevsky,
L.Hanson,
S.Z.Fisher,
M.Mustyakimov,
S.A.Mason,
V.T.Forsyth,
M.P.Blakeley,
D.A.Keen,
T.Wagner,
H.L.Carrell,
A.K.Katz,
J.P.Glusker,
P.Langan.
Metal Ion Roles and the Movement of Hydrogen During Reaction Catalyzed By D-Xylose Isomerase: A Joint X-Ray and Neutron Diffraction Study. Structure V. 18 688 2010.
ISSN: ISSN 0969-2126
PubMed: 20541506
DOI: 10.1016/J.STR.2010.03.011
Page generated: Sat Dec 12 08:22:16 2020
ISSN: ISSN 0969-2126
PubMed: 20541506
DOI: 10.1016/J.STR.2010.03.011
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