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Cadmium in PDB 3kd0: Human Thioredoxin C35S,C62S,C69S,C73S Mutant Showing Cadmium Chloride Bound to the Active Site

Protein crystallography data

The structure of Human Thioredoxin C35S,C62S,C69S,C73S Mutant Showing Cadmium Chloride Bound to the Active Site, PDB code: 3kd0 was solved by G.Hall, J.Emsley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.22 / 1.70
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.635, 53.635, 154.148, 90.00, 90.00, 120.00
R / Rfree (%) 23.2 / 27.9

Other elements in 3kd0:

The structure of Human Thioredoxin C35S,C62S,C69S,C73S Mutant Showing Cadmium Chloride Bound to the Active Site also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Human Thioredoxin C35S,C62S,C69S,C73S Mutant Showing Cadmium Chloride Bound to the Active Site (pdb code 3kd0). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Human Thioredoxin C35S,C62S,C69S,C73S Mutant Showing Cadmium Chloride Bound to the Active Site, PDB code: 3kd0:

Cadmium binding site 1 out of 1 in 3kd0

Go back to Cadmium Binding Sites List in 3kd0
Cadmium binding site 1 out of 1 in the Human Thioredoxin C35S,C62S,C69S,C73S Mutant Showing Cadmium Chloride Bound to the Active Site


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Human Thioredoxin C35S,C62S,C69S,C73S Mutant Showing Cadmium Chloride Bound to the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd108

b:13.9
occ:1.00
SG A:CYS32 2.3 11.9 1.0
CL A:CL107 2.4 16.2 1.0
CL A:CL106 2.5 14.8 1.0
CL A:CL109 2.6 18.3 1.0
O A:MET74 2.8 10.5 1.0
CB A:CYS32 3.4 13.6 1.0
C A:MET74 3.7 12.0 1.0
O A:HOH129 4.1 19.0 1.0
CA A:CYS32 4.2 14.0 1.0
N A:MET74 4.3 12.3 1.0
CB A:MET74 4.3 7.9 1.0
CD A:PRO34 4.3 13.8 1.0
CA A:MET74 4.3 10.5 1.0
CG A:PRO34 4.6 16.3 1.0
CZ3 A:TRP31 4.6 12.2 1.0
O A:HOH112 4.6 15.3 1.0
N A:PRO75 4.7 10.4 1.0
O A:HOH152 4.7 23.1 1.0
C A:CYS32 4.9 13.6 1.0
CD A:PRO75 4.9 11.1 1.0

Reference:

G.Hall, J.Emsley. The 1.7 A Resolution Crystal Structure of A Cadmium Chloride Complex with the Active Site of A Mutant Human Thioredoxin To Be Published.
Page generated: Wed Oct 28 10:03:36 2020
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