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Cadmium in PDB 3ktr: Structural Basis of Ataxin-2 Recognition By Poly(A)-Binding Protein

Protein crystallography data

The structure of Structural Basis of Ataxin-2 Recognition By Poly(A)-Binding Protein, PDB code: 3ktr was solved by G.Kozlov, K.Gehring, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.88 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 39.093, 60.745, 31.520, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 24.5

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Structural Basis of Ataxin-2 Recognition By Poly(A)-Binding Protein (pdb code 3ktr). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Structural Basis of Ataxin-2 Recognition By Poly(A)-Binding Protein, PDB code: 3ktr:

Cadmium binding site 1 out of 1 in 3ktr

Go back to Cadmium Binding Sites List in 3ktr
Cadmium binding site 1 out of 1 in the Structural Basis of Ataxin-2 Recognition By Poly(A)-Binding Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structural Basis of Ataxin-2 Recognition By Poly(A)-Binding Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1

b:37.9
occ:1.00
O A:GLU598 2.2 21.0 1.0
C A:GLU598 3.4 19.7 1.0
CA A:GLU598 4.1 20.1 1.0
CB A:GLU598 4.4 20.3 1.0
N A:SER599 4.5 17.9 1.0
CD A:PRO600 4.5 16.2 1.0
CA A:SER599 4.7 17.4 1.0

Reference:

G.Kozlov, N.Safaee, A.Rosenauer, K.Gehring. Structural Basis of Binding of P-Body-Associated Proteins GW182 and Ataxin-2 By the Mlle Domain of Poly(A)-Binding Protein. J.Biol.Chem. V. 285 13599 2010.
ISSN: ISSN 0021-9258
PubMed: 20181956
DOI: 10.1074/JBC.M109.089540
Page generated: Fri Aug 28 13:46:58 2020
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