Atomistry » Cadmium » PDB 3heq-3o7s » 3l6p
Atomistry »
  Cadmium »
    PDB 3heq-3o7s »
      3l6p »

Cadmium in PDB 3l6p: Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease

Enzymatic activity of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease

All present enzymatic activity of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease:
2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13;

Protein crystallography data

The structure of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease, PDB code: 3l6p was solved by S.Chandramouli, J.S.Joseph, S.Daudenarde, J.Gatchalian, C.Cornillez-Ty, P.Kuhn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.95 / 2.20
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 56.721, 60.848, 161.644, 90.00, 90.00, 90.00
R / Rfree (%) 23.9 / 28.4

Other elements in 3l6p:

The structure of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease also contains other interesting chemical elements:

Nickel (Ni) 3 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease (pdb code 3l6p). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease, PDB code: 3l6p:

Cadmium binding site 1 out of 1 in 3l6p

Go back to Cadmium Binding Sites List in 3l6p
Cadmium binding site 1 out of 1 in the Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd304

b:47.5
occ:1.00
ND1 A:HIS23 1.9 38.7 1.0
ND1 A:HIS28 2.3 58.5 1.0
OE2 A:GLU144 2.5 43.8 1.0
OE1 A:GLU144 2.5 37.4 1.0
CE1 A:HIS23 2.5 41.4 1.0
O A:HOH416 2.6 39.1 1.0
CD A:GLU144 2.8 33.7 1.0
CE1 A:HIS28 3.2 57.5 1.0
CG A:HIS23 3.2 48.1 1.0
CG A:HIS28 3.3 57.2 1.0
CB A:HIS28 3.6 53.5 1.0
NE2 A:HIS23 3.8 42.0 1.0
CB A:HIS23 3.9 51.4 1.0
CD2 A:HIS23 4.1 42.7 1.0
CA A:HIS28 4.2 53.3 1.0
NE2 A:HIS28 4.3 61.4 1.0
CG A:GLU144 4.4 40.4 1.0
NE2 A:GLN160 4.4 39.0 1.0
CD2 A:HIS28 4.4 59.5 1.0
CG A:GLN160 4.8 40.6 1.0
O A:GLN160 4.8 40.4 1.0
O A:SER27 4.8 58.3 1.0
CD A:GLN160 5.0 41.3 1.0

Reference:

S.Chandramouli, J.S.Joseph, S.Daudenarde, J.Gatchalian, C.Cornillez-Ty, P.Kuhn. Serotype-Specific Structural Differences in the Protease-Cofactor Complexes of the Dengue Virus Family. J.Virol. V. 84 3059 2010.
ISSN: ISSN 0022-538X
PubMed: 20042502
DOI: 10.1128/JVI.02044-09
Page generated: Sun Jan 24 09:55:51 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy