The binding sites of Cadmium atom in the structure of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease (pdb code 3l6p). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 3l6p structure was solved by S.CHANDRAMOULI, J.S.JOSEPH, S.DAUDENARDE, J.GATCHALIAN, C.CORNILLEZ-TY, P.KUHN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 28.9-2.2 | | Space group | I222 | | a (A) | 56.721 | | b (A) | 60.848 | | c (A) | 161.644 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 90.00 | | Rfactor (%) | 23.9 | | Rfree (%) | 28.4 |
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Cadmium binding site 1 out of 1 in 3l6p
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Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 3l6p. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His23, A: Ser27, A: His28, A: Glu144, A: Gln160, A: Hoh416, | conact list:
| Atom | Atom | Distance (A) | | Cd | NE2 A:His23 | 3.76 | | Cd | CB A:His23 | 3.88 | | Cd | ND1 A:His23 | 1.89 | | Cd | CD2 A:His23 | 4.09 | | Cd | CE1 A:His23 | 2.50 | | Cd | CG A:His23 | 3.18 | | Cd | O A:Ser27 | 4.78 | | Cd | NE2 A:His28 | 4.31 | | Cd | CB A:His28 | 3.63 | | Cd | ND1 A:His28 | 2.28 | | Cd | CD2 A:His28 | 4.40 | | Cd | CE1 A:His28 | 3.17 | | Cd | CG A:His28 | 3.30 | | Cd | CA A:His28 | 4.18 | | Cd | OE1 A:Glu144 | 2.47 | | Cd | OE2 A:Glu144 | 2.47 | | Cd | CD A:Glu144 | 2.83 | | Cd | CG A:Glu144 | 4.36 | | Cd | O A:Gln160 | 4.77 | | Cd | NE2 A:Gln160 | 4.39 | | Cd | CD A:Gln160 | 4.98 | | Cd | CG A:Gln160 | 4.76 | | Cd | O A:Hoh416 | 2.63 |
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