Cadmium in PDB 3le1: Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis

The structure of Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis, PDB code: 3le1 was solved by T.M.Fu, X.D.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.04 / 1.51
Space group	P 42
Cell size a, b, c (Å), α, β, γ (°)	57.860, 57.860, 42.080, 90.00, 90.00, 90.00
R / Rfree (%)	21.8 / 24.8

The binding sites of Cadmium atom in the Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis (pdb code 3le1). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 6 binding sites of Cadmium where determined in the Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis, PDB code: 3le1:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6;

Cadmium binding site 1 out of 6 in the Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd89 b:56.6 occ:1.00 OE2 A:GLU71 2.3 21.4 1.0 O A:HOH99 2.4 9.3 1.0 O A:HOH129 2.6 32.5 1.0 OE1 A:GLU71 2.8 23.2 1.0 CD A:GLU71 2.9 21.0 1.0 CG A:GLU71 4.3 16.6 1.0

Cadmium binding site 2 out of 6 in the Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd90 b:56.1 occ:1.00 O B:HOH93 2.5 11.7 1.0 OE1 A:GLU71 3.8 23.2 1.0 OE1 B:GLU71 3.9 16.3 1.0 CB A:GLU71 4.4 14.6 1.0 CB B:GLU71 4.4 11.5 1.0 O A:HOH131 4.5 13.9 1.0 CD A:GLU71 4.7 21.0 1.0 CD B:GLU71 4.8 15.1 1.0 CG A:GLU72 4.8 15.9 1.0 CG B:GLU72 5.0 13.1 1.0

Cadmium binding site 3 out of 6 in the Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd92 b:72.7 occ:1.00 O A:HOH107 2.3 22.5 1.0 O A:HOH108 2.3 30.4 1.0 O A:HOH110 2.5 21.0 1.0 O A:HOH115 2.6 32.9 1.0

Cadmium binding site 4 out of 6 in the Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd91 b:25.4 occ:1.00 O A:HOH113 2.3 17.4 1.0 O A:HOH114 2.3 22.5 1.0 O A:HOH104 2.6 20.8 1.0 O A:HOH94 2.6 14.6 1.0 CB A:ASN10 4.2 19.9 1.0 CG A:LYS11 4.3 19.1 1.0 N A:LYS11 4.3 15.8 1.0 CB A:LYS11 4.7 18.1 1.0 CA A:ASN10 4.8 18.8 1.0

Cadmium binding site 5 out of 6 in the Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd89 b:33.1 occ:1.00 O B:HOH106 2.2 34.4 1.0 O B:HOH113 2.4 30.8 1.0 O B:HOH98 2.8 26.5 1.0 O B:HOH111 3.4 13.5 1.0 N B:MET1 4.2 10.3 1.0 CG B:GLU66 4.4 16.5 1.0 CB B:MET1 4.5 12.5 1.0 CA B:MET1 4.9 11.6 1.0

Cadmium binding site 6 out of 6 in the Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd91 b:29.2 occ:0.50 O B:HOH129 2.5 22.6 1.0 CG B:MET51 3.7 32.1 1.0 O B:HOH127 4.3 27.0 1.0 CB B:MET51 4.8 30.7 1.0

T.M.Fu, X.D.Su. Dimerization of Hpr By Reversible Domain Swapping. To Be Published.