Cadmium in the structure of Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis (pdb 3le1)

The binding sites of Cadmium atom in the structure of Crystal Structure of Apohpr Monomer From Thermoanaerobacter Tengcongensis (pdb code 3le1). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom. The 3le1 structure was solved by T.M.FU, X.D.SU, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 22.0-1.5 Space group P42 a (A) 57.860 b (A) 57.860 c (A) 42.080 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 21.8 Rfree (%) 24.8 Cadmium Binding Sites: Cadmium binding site 1 out of 6 in 3le1 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 3le1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu71, A: Hoh99, A: Hoh129, conact list: Atom Atom Distance (A) Cd OE1 A:Glu71 2.83 Cd OE2 A:Glu71 2.28 Cd CD A:Glu71 2.88 Cd CG A:Glu71 4.34 Cd O A:Hoh99 2.36 Cd O A:Hoh129 2.56 interactive model: Cadmium binding site 2 out of 6 in 3le1 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 3le1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu71, A: Glu72, B: Glu71, B: Glu72, A: Hoh131, B: Hoh93, conact list: Atom Atom Distance (A) Cd OE1 A:Glu71 3.81 Cd CB A:Glu71 4.37 Cd CD A:Glu71 4.73 Cd CG A:Glu72 4.84 Cd OE1 B:Glu71 3.89 Cd CB B:Glu71 4.39 Cd CD B:Glu71 4.77 Cd CG B:Glu72 5.00 Cd O A:Hoh131 4.49 Cd O B:Hoh93 2.50 interactive model: Cadmium binding site 3 out of 6 in 3le1 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cadmium in the PDB 3le1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Hoh107, A: Hoh108, A: Hoh110, A: Hoh115, conact list: Atom Atom Distance (A) Cd O A:Hoh107 2.31 Cd O A:Hoh108 2.31 Cd O A:Hoh110 2.52 Cd O A:Hoh115 2.57 interactive model: Cadmium binding site 4 out of 6 in 3le1 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cadmium in the PDB 3le1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asn10, A: Lys11, A: Hoh94, A: Hoh104, A: Hoh113, A: Hoh114, conact list: Atom Atom Distance (A) Cd CB A:Asn10 4.22 Cd CA A:Asn10 4.83 Cd N A:Lys11 4.35 Cd CB A:Lys11 4.65 Cd CG A:Lys11 4.27 Cd O A:Hoh94 2.63 Cd O A:Hoh104 2.56 Cd O A:Hoh113 2.32 Cd O A:Hoh114 2.34 interactive model: Cadmium binding site 5 out of 6 in 3le1 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Cadmium in the PDB 3le1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Met1, B: Glu66, B: Hoh98, B: Hoh106, B: Hoh111, B: Hoh113, conact list: Atom Atom Distance (A) Cd N B:Met1 4.22 Cd CB B:Met1 4.49 Cd CA B:Met1 4.93 Cd CG B:Glu66 4.37 Cd O B:Hoh98 2.84 Cd O B:Hoh106 2.22 Cd O B:Hoh111 3.40 Cd O B:Hoh113 2.40 interactive model: Cadmium binding site 6 out of 6 in 3le1 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Cadmium in the PDB 3le1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Met51, B: Hoh127, B: Hoh129, conact list: Atom Atom Distance (A) Cd CB B:Met51 4.81 Cd CG B:Met51 3.71 Cd O B:Hoh127 4.33 Cd O B:Hoh129 2.51 interactive model: