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Cadmium in PDB 3lkw: Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease Active Site Mutant

Enzymatic activity of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease Active Site Mutant

All present enzymatic activity of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease Active Site Mutant:
2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13;

Protein crystallography data

The structure of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease Active Site Mutant, PDB code: 3lkw was solved by S.Chandramouli, J.S.Joseph, S.Daudenarde, J.Gatchalian, C.Cornillez-Ty, P.Kuhn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 56.868, 60.893, 160.616, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.9

Other elements in 3lkw:

The structure of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease Active Site Mutant also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease Active Site Mutant (pdb code 3lkw). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease Active Site Mutant, PDB code: 3lkw:

Cadmium binding site 1 out of 1 in 3lkw

Go back to Cadmium Binding Sites List in 3lkw
Cadmium binding site 1 out of 1 in the Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease Active Site Mutant


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease Active Site Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd301

b:38.5
occ:1.00
 ND1 A:HIS23 1.9 30.6 1.0
ND1 A:HIS28 2.1 51.2 1.0
OE2 A:GLU144 2.4 30.8 1.0
OE1 A:GLU144 2.4 30.9 1.0
O A:HOH433 2.5 30.7 1.0
CE1 A:HIS23 2.7 39.7 1.0
CD A:GLU144 2.7 24.3 1.0
CE1 A:HIS28 2.9 52.4 1.0
CG A:HIS23 3.1 36.8 1.0
CG A:HIS28 3.3 48.3 1.0
CB A:HIS23 3.7 38.9 1.0
CB A:HIS28 3.7 43.6 1.0
NE2 A:HIS23 3.9 33.9 1.0
NE2 A:HIS28 4.1 53.5 1.0
CD2 A:HIS23 4.1 34.9 1.0
CA A:HIS28 4.1 43.1 1.0
CG A:GLU144 4.2 34.1 1.0
CD2 A:HIS28 4.3 52.3 1.0
NE2 A:GLN160 4.5 33.1 1.0
O A:GLN160 4.7 32.8 1.0
O A:HOH419 4.8 47.3 1.0
CG A:GLN160 4.8 34.2 1.0
O A:HOH418 4.9 46.5 1.0
O A:SER27 4.9 49.7 1.0
N A:ASN29 4.9 38.8 1.0
CA A:HIS23 5.0 41.0 1.0

Reference:

S.Chandramouli, J.S.Joseph, S.Daudenarde, J.Gatchalian, C.Cornillez-Ty, P.Kuhn. Serotype-Specific Structural Differences in the Protease-Cofactor Complexes of the Dengue Virus Family. J.Virol. V. 84 3059 2010.
ISSN: ISSN 0022-538X
PubMed: 20042502
DOI: 10.1128/JVI.02044-09
Page generated: Fri Jul 19 16:12:49 2024

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