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Cadmium in PDB 3np0: Crystal Structure of Pd(Allyl)/Apo-E45C/H49A/R52H-Rhlfr

Protein crystallography data

The structure of Crystal Structure of Pd(Allyl)/Apo-E45C/H49A/R52H-Rhlfr, PDB code: 3np0 was solved by Z.Wang, T.Ueno, S.Abe, Y.Takezawa, H.Aoyagi, T.Hikage, Y.Watanabe, S.Kitagawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.29 / 1.48
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 180.959, 180.959, 180.959, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 21

Other elements in 3np0:

The structure of Crystal Structure of Pd(Allyl)/Apo-E45C/H49A/R52H-Rhlfr also contains other interesting chemical elements:

Palladium (Pd) 6 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Pd(Allyl)/Apo-E45C/H49A/R52H-Rhlfr (pdb code 3np0). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Pd(Allyl)/Apo-E45C/H49A/R52H-Rhlfr, PDB code: 3np0:

Cadmium binding site 1 out of 1 in 3np0

Go back to Cadmium Binding Sites List in 3np0
Cadmium binding site 1 out of 1 in the Crystal Structure of Pd(Allyl)/Apo-E45C/H49A/R52H-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Pd(Allyl)/Apo-E45C/H49A/R52H-Rhlfr within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cd177

b:14.4
occ:0.50
OD1 X:ASP80 2.5 11.5 1.0
OD2 X:ASP80 2.6 15.6 1.0
CG X:ASP80 2.9 11.9 1.0
CB X:ASP80 4.4 12.3 1.0
O X:HOH237 4.6 18.3 1.0

Reference:

Z.Wang, Y.Takezawa, H.Aoyagi, S.Abe, T.Hikage, Y.Watanabe, S.Kitagawa, T.Ueno. Definite Coordination Arrangement of Organometallic Palladium Complexes Accumulated on the Designed Interior Surface of Apo-Ferritin. Chem.Commun.(Camb.) V. 47 170 2011.
ISSN: ISSN 1359-7345
PubMed: 20730233
DOI: 10.1039/C0CC02221G
Page generated: Wed Oct 28 10:03:50 2020
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