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Cadmium in PDB 3nqi: Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution, PDB code: 3nqi was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.29 / 1.87
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 157.490, 77.227, 97.406, 90.00, 103.85, 90.00
R / Rfree (%) 19.1 / 22

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution (pdb code 3nqi). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 27 binding sites of Cadmium where determined in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution, PDB code: 3nqi:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10; 11; 12; 13; 14; 15; 16; 17; 18; 19; 20; 21; 22; 23; 24; 25; 26; 27;

Cadmium binding site 1 out of 27 in 3nqi

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Cadmium binding site 1 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd300

b:42.0
occ:0.50
OD2 A:ASP184 2.2 30.3 0.5
O A:ILE186 2.3 28.2 1.0
O A:HOH678 2.4 46.3 1.0
O A:HOH530 2.7 32.8 1.0
O A:HOH384 2.7 22.6 1.0
CG A:ASP184 2.8 23.4 0.5
OD1 A:ASP184 2.8 20.3 0.5
OD2 A:ASP184 3.4 24.3 0.5
C A:ILE186 3.4 25.0 1.0
CG A:ASP184 3.8 32.5 0.5
CB A:ASP184 4.1 28.9 0.5
CB A:ILE186 4.2 27.9 1.0
CB A:ASP184 4.2 28.3 0.5
N A:LYS188 4.2 23.9 1.0
CA A:ILE186 4.3 24.7 1.0
N A:LEU187 4.3 23.1 1.0
CA A:LEU187 4.4 22.1 1.0
N A:ILE186 4.5 26.5 1.0
OD1 A:ASP184 4.5 32.5 0.5
CB A:LYS188 4.6 24.7 1.0
CG2 A:ILE186 4.6 27.9 1.0
C A:LEU187 4.7 21.2 1.0
O A:HOH647 4.7 41.1 1.0
O A:ASP179 4.8 38.8 1.0

Cadmium binding site 2 out of 27 in 3nqi

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Cadmium binding site 2 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd301

b:31.9
occ:1.00
O A:HOH354 2.1 24.5 1.0
OD1 A:ASP97 2.2 27.9 1.0
O A:HOH496 2.4 35.6 1.0
O A:HOH347 2.5 22.4 1.0
CL A:CL328 2.5 34.0 1.0
O A:HOH356 2.5 23.4 1.0
CG A:ASP97 3.0 30.0 1.0
OD2 A:ASP97 3.2 37.7 1.0
O A:HOH566 3.5 41.3 1.0
OG1 A:THR65 4.2 34.6 1.0
O A:HOH590 4.2 42.9 1.0
O A:HOH353 4.4 25.5 1.0
O A:PRO98 4.5 27.4 1.0
N A:LEU66 4.5 29.6 1.0
CD A:PRO98 4.5 27.4 1.0
CB A:ASP97 4.5 29.0 1.0
N A:PRO98 4.8 26.7 1.0
CA A:LEU66 4.9 28.9 1.0
N A:THR65 4.9 28.9 1.0
CB A:LEU66 4.9 24.6 1.0

Cadmium binding site 3 out of 27 in 3nqi

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Cadmium binding site 3 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd302

b:29.0
occ:0.62
CD A:CD302 0.0 29.0 0.6
CD A:CD302 1.5 41.9 0.4
CL A:CL323 1.9 36.4 1.0
OE1 A:GLU160 2.5 33.7 1.0
OE2 A:GLU160 2.7 42.8 1.0
CD A:GLU160 3.0 36.8 1.0
CB A:THR158 4.3 40.5 1.0
CG A:GLU160 4.5 37.5 1.0
N A:THR159 4.6 37.5 1.0
O A:HOH415 4.7 30.9 1.0
CG2 A:THR158 4.8 35.5 1.0
N A:GLU160 4.8 30.4 1.0
OG1 A:THR158 5.0 32.6 1.0

Cadmium binding site 4 out of 27 in 3nqi

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Cadmium binding site 4 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd302

b:41.9
occ:0.38
CD A:CD302 0.0 41.9 0.4
CD A:CD302 1.5 29.0 0.6
OE2 A:GLU160 1.7 42.8 1.0
CD A:GLU160 2.4 36.8 1.0
OE1 A:GLU160 2.5 33.7 1.0
CL A:CL323 3.3 36.4 1.0
CG A:GLU160 3.8 37.5 1.0
O A:HOH415 4.4 30.9 1.0
CB A:GLU160 4.7 31.4 1.0

Cadmium binding site 5 out of 27 in 3nqi

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Cadmium binding site 5 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd307

b:29.8
occ:1.00
OE2 B:GLU223 2.0 29.0 1.0
O A:HOH489 2.2 33.3 1.0
OE1 A:GLU142 2.4 23.6 1.0
OE1 A:GLU267 2.5 34.1 1.0
OE2 A:GLU142 2.6 24.7 1.0
OE2 A:GLU267 2.6 52.8 1.0
CD B:GLU223 2.7 30.9 1.0
OE1 B:GLU223 2.8 49.9 1.0
CD A:GLU142 2.8 21.9 1.0
O B:HOH705 2.9 57.5 1.0
CD A:GLU267 2.9 52.1 1.0
CD1 B:LEU226 3.9 26.5 1.0
CG B:GLU223 4.1 36.0 1.0
NH1 B:ARG222 4.2 23.4 0.5
CG A:GLU142 4.3 21.7 1.0
CG A:GLU267 4.4 54.2 1.0
CB A:ALA266 4.5 40.0 1.0
N A:ALA266 4.6 36.1 1.0
NZ B:LYS227 4.9 56.6 1.0
N A:GLU267 4.9 51.5 1.0

Cadmium binding site 6 out of 27 in 3nqi

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Cadmium binding site 6 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd303

b:29.6
occ:1.00
O B:HOH412 1.9 29.1 1.0
OE2 A:GLU223 2.1 27.9 1.0
OE1 B:GLU142 2.4 24.4 1.0
OE1 B:GLU267 2.4 35.6 1.0
OE1 A:GLU223 2.6 49.0 1.0
OE2 B:GLU267 2.7 53.0 1.0
CD A:GLU223 2.7 27.9 1.0
OE2 B:GLU142 2.7 27.1 1.0
CD B:GLU142 2.9 24.6 1.0
CD B:GLU267 2.9 52.9 1.0
CG A:GLU223 4.1 34.6 1.0
CD1 A:LEU226 4.1 26.3 1.0
NH1 A:ARG222 4.2 21.8 0.5
CG B:GLU142 4.4 23.6 1.0
CG B:GLU267 4.5 54.4 1.0
CB B:ALA266 4.5 42.1 1.0
NH2 A:ARG222 4.5 33.1 0.5
N B:ALA266 4.6 36.9 1.0
N B:GLU267 4.9 51.7 1.0
CZ A:ARG222 4.9 25.3 0.5
CB B:THR265 4.9 27.2 1.0

Cadmium binding site 7 out of 27 in 3nqi

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Cadmium binding site 7 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd304

b:38.2
occ:0.50
O B:ILE186 2.3 27.5 1.0
O B:HOH674 2.3 45.9 1.0
OD2 B:ASP184 2.3 29.4 0.5
OD1 B:ASP184 2.7 23.3 0.5
O B:HOH397 2.8 24.2 1.0
CG B:ASP184 2.8 24.0 0.5
C B:ILE186 3.4 25.5 1.0
OD2 B:ASP184 3.4 27.9 0.5
CG B:ASP184 3.8 28.2 0.5
CB B:ASP184 4.1 28.8 0.5
CB B:ASP184 4.2 29.4 0.5
CA B:ILE186 4.2 26.1 0.5
CA B:ILE186 4.2 27.1 0.5
CB B:ILE186 4.3 28.6 0.5
N B:LEU187 4.3 24.1 1.0
CB B:ILE186 4.3 26.7 0.5
N B:LYS188 4.3 23.3 1.0
CA B:LEU187 4.4 23.7 1.0
N B:ILE186 4.4 26.2 1.0
OD1 B:ASP184 4.6 28.8 0.5
CG2 B:ILE186 4.7 23.6 0.5
CB B:LYS188 4.8 25.9 1.0
C B:LEU187 4.8 21.7 1.0
CG2 B:ILE186 4.9 26.0 0.5

Cadmium binding site 8 out of 27 in 3nqi

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Cadmium binding site 8 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd305

b:29.9
occ:1.00
O B:HOH357 2.2 23.5 1.0
OD1 B:ASP97 2.2 26.5 1.0
O B:HOH448 2.3 31.0 1.0
O B:HOH362 2.5 25.0 1.0
CL B:CL325 2.5 30.6 1.0
O B:HOH350 2.5 23.2 1.0
CG B:ASP97 3.1 28.5 1.0
OD2 B:ASP97 3.3 34.2 1.0
O B:HOH618 3.5 40.8 1.0
O B:HOH488 4.3 33.9 1.0
OG1 B:THR65 4.3 31.6 1.0
O B:PRO98 4.5 26.1 1.0
N B:LEU66 4.5 28.1 1.0
CB B:ASP97 4.6 28.4 1.0
CD B:PRO98 4.6 27.1 1.0
CA B:LEU66 4.9 27.4 1.0
N B:PRO98 4.9 26.4 1.0
N B:THR65 4.9 26.6 1.0

Cadmium binding site 9 out of 27 in 3nqi

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Cadmium binding site 9 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd306

b:42.4
occ:0.60
CD B:CD306 0.0 42.4 0.6
OXT B:ACT342 1.7 33.0 1.0
CD B:CD306 2.2 44.1 0.4
OE2 B:GLU160 2.3 57.3 1.0
OE1 B:GLU160 2.4 48.4 1.0
CD B:GLU160 2.7 49.2 1.0
C B:ACT342 2.9 45.0 1.0
O B:ACT342 3.3 51.4 1.0
CH3 B:ACT342 4.1 47.3 1.0
CG B:GLU160 4.1 50.7 1.0
CB B:THR158 4.5 53.1 1.0
N B:GLU160 4.9 43.3 1.0
CB B:GLU160 4.9 44.0 1.0
CG2 B:THR158 5.0 48.4 1.0

Cadmium binding site 10 out of 27 in 3nqi

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Cadmium binding site 10 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd306

b:44.1
occ:0.40
CD B:CD306 0.0 44.1 0.4
OE2 B:GLU160 1.9 57.3 1.0
CD B:CD306 2.2 42.4 0.6
CD B:GLU160 2.8 49.2 1.0
OE1 B:GLU160 3.4 48.4 1.0
CG B:GLU160 3.9 50.7 1.0
OXT B:ACT342 3.9 33.0 1.0
CB B:GLU160 5.0 44.0 1.0

Cadmium binding site 11 out of 27 in 3nqi

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Cadmium binding site 11 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 11 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd308

b:60.3
occ:0.50
CD B:CD308 0.0 60.3 0.5
CD B:CD308 2.3 96.5 0.5
OE1 B:GLU262 2.6 57.9 1.0
CD B:GLU262 3.3 56.4 1.0
OE2 B:GLU262 3.4 56.0 1.0
CG B:GLU262 4.7 38.8 1.0

Cadmium binding site 12 out of 27 in 3nqi

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Cadmium binding site 12 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 12 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd308

b:96.5
occ:0.50
CD B:CD308 0.0 96.5 0.5
CD B:CD308 2.3 60.3 0.5
OE1 B:GLU262 2.4 57.9 1.0
CD B:GLU262 3.6 56.4 1.0
OE2 B:GLU262 4.1 56.0 1.0
CG B:GLU262 4.8 38.8 1.0
CB B:GLU262 4.8 30.4 1.0
O B:HOH639 4.9 42.3 1.0

Cadmium binding site 13 out of 27 in 3nqi

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Cadmium binding site 13 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 13 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd309

b:73.7
occ:0.50
O B:HOH613 2.1 54.5 1.0
OE1 B:GLU198 2.2 78.3 1.0
CD B:GLU198 3.1 68.0 1.0
OE2 B:GLU198 3.9 73.8 1.0
CG B:GLU198 4.0 55.0 1.0

Cadmium binding site 14 out of 27 in 3nqi

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Cadmium binding site 14 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 14 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd318

b:84.5
occ:0.50
CD B:CD318 0.0 84.5 0.5
OE2 B:GLU113 2.5 74.4 1.0
CD B:CD318 3.0 70.6 0.5
OE1 B:GLU113 3.0 66.7 1.0
CD B:GLU113 3.0 62.0 1.0
CG B:GLU113 4.4 56.3 1.0
NZ B:LYS110 4.7 59.6 1.0
O B:HOH627 4.8 55.6 1.0

Cadmium binding site 15 out of 27 in 3nqi

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Cadmium binding site 15 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 15 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd318

b:70.6
occ:0.50
CD B:CD318 0.0 70.6 0.5
O B:HOH627 2.4 55.6 1.0
OE1 B:GLU113 2.5 66.7 1.0
OE2 B:GLU113 2.8 74.4 1.0
CD B:GLU113 2.9 62.0 1.0
CD B:CD318 3.0 84.5 0.5
NZ B:LYS110 4.2 59.6 1.0
CG B:GLU113 4.3 56.3 1.0

Cadmium binding site 16 out of 27 in 3nqi

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Cadmium binding site 16 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 16 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd319

b:22.9
occ:0.70
CD B:CD319 0.0 22.9 0.7
CD B:CD319 1.6 35.0 0.3
O B:HOH464 2.0 30.1 1.0
OE1 B:GLU260 2.4 30.3 1.0
OE2 B:GLU260 2.5 39.3 1.0
CD B:GLU260 2.8 29.5 1.0
NZ B:LYS235 3.8 36.4 1.0
CG B:GLU260 4.3 30.1 1.0
O B:HOH684 4.5 49.9 1.0
CD B:LYS235 4.9 37.2 1.0
CE B:LYS235 4.9 37.2 1.0

Cadmium binding site 17 out of 27 in 3nqi

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Cadmium binding site 17 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 17 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd319

b:35.0
occ:0.30
CD B:CD319 0.0 35.0 0.3
CD B:CD319 1.6 22.9 0.7
O B:HOH464 2.4 30.1 1.0
OE1 B:GLU260 2.8 30.3 1.0
CD B:GLU260 3.7 29.5 1.0
OE2 B:GLU260 3.9 39.3 1.0
O B:HOH684 4.0 49.9 1.0

Cadmium binding site 18 out of 27 in 3nqi

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Cadmium binding site 18 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 18 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd310

b:43.0
occ:1.00
O C:HOH541 2.3 41.9 1.0
OD1 C:ASP97 2.4 39.2 1.0
O C:HOH408 2.4 36.6 1.0
O C:HOH359 2.5 37.8 1.0
CL C:CL326 2.6 43.4 1.0
O C:HOH392 2.6 38.0 1.0
CG C:ASP97 3.1 38.7 1.0
OD2 C:ASP97 3.2 46.8 1.0
O C:HOH471 3.6 45.9 1.0
OG1 C:THR65 4.1 43.5 1.0
CD C:PRO98 4.4 37.6 1.0
O C:HOH396 4.4 37.8 1.0
O C:PRO98 4.5 36.4 1.0
CB C:ASP97 4.6 39.5 1.0
N C:LEU66 4.6 39.0 1.0
N C:PRO98 4.8 36.5 1.0
N C:THR65 4.9 38.5 1.0
CA C:LEU66 4.9 37.9 1.0

Cadmium binding site 19 out of 27 in 3nqi

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Cadmium binding site 19 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 19 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd311

b:52.2
occ:1.00
OXT C:ACT343 2.0 54.4 1.0
OE2 C:GLU160 2.1 46.1 1.0
OE1 C:GLU160 2.4 39.4 1.0
CD C:GLU160 2.6 39.9 1.0
C C:ACT343 3.0 58.2 1.0
O C:ACT343 3.2 62.3 1.0
CG C:GLU160 4.1 41.4 1.0
CB C:THR158 4.3 44.3 1.0
CH3 C:ACT343 4.4 59.9 1.0
N C:THR159 4.8 41.6 1.0
OG1 C:THR158 4.9 38.6 1.0
N C:GLU160 4.9 35.2 1.0
CG2 C:THR158 5.0 40.0 1.0

Cadmium binding site 20 out of 27 in 3nqi

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Cadmium binding site 20 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 20 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd313

b:49.9
occ:0.50
OE2 C:GLU262 2.3 69.9 1.0
OE1 C:GLU262 2.4 73.4 1.0
CD C:GLU262 2.6 71.5 1.0
CL C:CL324 2.7 47.1 1.0
CG C:GLU262 4.1 53.7 1.0
NZ C:LYS264 4.5 66.4 1.0
CE C:LYS264 4.9 69.0 1.0
CB C:GLU262 4.9 46.9 1.0

Cadmium binding site 21 out of 27 in 3nqi

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Cadmium binding site 21 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 21 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd316

b:46.9
occ:1.00
O C:HOH355 1.8 33.6 1.0
OE2 D:GLU223 2.0 50.2 1.0
OE2 C:GLU267 2.2 68.7 1.0
OE1 C:GLU142 2.5 38.1 1.0
OE1 C:GLU267 2.5 53.8 1.0
OE2 C:GLU142 2.6 41.0 1.0
CD C:GLU267 2.7 70.2 1.0
CD D:GLU223 2.8 51.0 1.0
CD C:GLU142 2.8 39.0 1.0
OE1 D:GLU223 3.0 69.6 1.0
CG C:GLU267 4.2 73.5 1.0
CG D:GLU223 4.2 53.2 1.0
CD1 D:LEU226 4.3 49.4 1.0
CG C:GLU142 4.3 36.5 1.0
CB C:ALA266 4.5 57.5 1.0
NH2 D:ARG222 4.5 43.1 0.5
N C:ALA266 4.6 54.1 1.0
N C:GLU267 5.0 70.3 1.0
CB C:THR265 5.0 46.6 1.0

Cadmium binding site 22 out of 27 in 3nqi

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Cadmium binding site 22 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 22 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd312

b:50.5
occ:1.00
OE2 C:GLU223 2.0 48.8 1.0
OE1 D:GLU267 2.4 61.1 1.0
OXT D:ACT340 2.4 68.6 1.0
OE1 D:GLU142 2.5 45.5 1.0
O D:ACT340 2.5 68.6 1.0
OE2 D:GLU267 2.6 78.8 1.0
CD C:GLU223 2.8 47.1 1.0
OE2 D:GLU142 2.8 49.1 1.0
CD D:GLU267 2.8 79.1 1.0
C D:ACT340 2.8 68.6 1.0
CD D:GLU142 3.0 46.0 1.0
OE1 C:GLU223 3.0 64.3 1.0
NH1 C:ARG222 3.7 39.1 0.5
CD1 C:LEU226 4.0 43.8 1.0
CG C:GLU223 4.1 49.9 1.0
CH3 D:ACT340 4.2 69.7 1.0
CG D:GLU267 4.4 82.8 1.0
CG D:GLU142 4.5 44.3 1.0
N D:ALA266 4.6 62.8 1.0
CB D:ALA266 4.7 67.5 1.0
NZ C:LYS227 4.8 71.8 1.0
CZ C:ARG222 4.9 42.3 0.5
CB D:THR265 4.9 53.7 1.0
N D:GLU267 4.9 79.0 1.0

Cadmium binding site 23 out of 27 in 3nqi

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Cadmium binding site 23 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 23 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd314

b:43.1
occ:1.00
O D:HOH495 2.2 41.9 1.0
OD1 D:ASP97 2.4 37.7 1.0
O D:HOH514 2.4 43.2 1.0
O D:HOH515 2.5 43.2 1.0
CL D:CL327 2.5 42.9 1.0
CG D:ASP97 3.1 38.2 1.0
OD2 D:ASP97 3.1 45.7 1.0
O D:HOH434 4.0 42.0 1.0
O D:HOH446 4.3 39.8 1.0
OG1 D:THR65 4.4 40.2 1.0
O D:PRO98 4.5 38.4 1.0
CB D:ASP97 4.5 38.9 1.0
N D:LEU66 4.5 39.2 1.0
CD D:PRO98 4.6 39.2 1.0
N D:PRO98 4.9 38.3 1.0
N D:THR65 4.9 38.0 1.0
CA D:LEU66 4.9 38.5 1.0

Cadmium binding site 24 out of 27 in 3nqi

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Cadmium binding site 24 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 24 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd315

b:47.1
occ:0.40
CD D:CD315 0.0 47.1 0.4
OE2 D:GLU160 2.0 72.9 1.0
CD D:CD315 2.2 43.7 0.4
CD D:GLU160 2.7 65.1 1.0
OE1 D:GLU160 3.0 64.8 1.0
CD D:CD315 4.1 45.6 0.2
CG D:GLU160 4.1 64.0 1.0

Cadmium binding site 25 out of 27 in 3nqi

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Cadmium binding site 25 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 25 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd315

b:43.7
occ:0.40
CD D:CD315 0.0 43.7 0.4
CD D:CD315 1.8 45.6 0.2
CD D:CD315 2.2 47.1 0.4
OE1 D:GLU160 2.3 64.8 1.0
OE2 D:GLU160 2.8 72.9 1.0
CD D:GLU160 2.9 65.1 1.0
CG D:GLU160 4.4 64.0 1.0
OG1 D:THR159 4.7 75.4 1.0
CB D:THR158 4.9 69.2 1.0
N D:GLU160 4.9 57.5 1.0

Cadmium binding site 26 out of 27 in 3nqi

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Cadmium binding site 26 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 26 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd315

b:45.6
occ:0.20
CD D:CD315 0.0 45.6 0.2
CD D:CD315 1.8 43.7 0.4
OE1 D:GLU160 3.2 64.8 1.0
OG1 D:THR159 3.4 75.4 1.0
N D:THR159 3.9 66.1 1.0
CD D:CD315 4.1 47.1 0.4
CD D:GLU160 4.1 65.1 1.0
CB D:THR158 4.2 69.2 1.0
CB D:THR159 4.2 68.4 1.0
OE2 D:GLU160 4.4 72.9 1.0
CA D:THR159 4.6 64.8 1.0
CA D:THR158 4.7 67.8 1.0
C D:THR158 4.8 66.0 1.0
N D:GLU160 4.8 57.5 1.0
CG2 D:THR158 4.9 66.0 1.0
OG1 D:THR158 4.9 63.3 1.0

Cadmium binding site 27 out of 27 in 3nqi

Go back to Cadmium Binding Sites List in 3nqi
Cadmium binding site 27 out of 27 in the Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 27 of Crystal Structure of A Putative Lipoprotein (BF3042) From Bacteroides Fragilis Nctc 9343 at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd317

b:72.5
occ:0.50
OE1 D:GLU198 2.4 88.0 1.0
OE2 D:GLU198 2.5 85.5 1.0
CD D:GLU198 2.8 78.1 1.0
CG D:GLU198 4.2 64.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
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