Cadmium in PDB 3oeo: The Crystal Structure E. Coli Spy

The structure of The Crystal Structure E. Coli Spy, PDB code: 3oeo was solved by E.Kwon, D.Y.Kim, C.A.Gross, J.D.Gross, K.K.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.70
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	69.195, 69.195, 126.347, 90.00, 90.00, 120.00
R / Rfree (%)	25.2 / 30

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Cadmium atom in the The Crystal Structure E. Coli Spy (pdb code 3oeo). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 22 binding sites of Cadmium where determined in the The Crystal Structure E. Coli Spy, PDB code: 3oeo:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cadmium binding site 1 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd5 b:68.4 occ:1.00 O A:HOH167 2.1 85.7 1.0 O A:HOH180 2.1 16.0 1.0 OD1 A:ASP59 2.7 0.1 1.0 OD2 A:ASP59 2.8 0.9 1.0 CG A:ASP59 3.1 0.9 1.0 O A:HOH168 3.5 20.9 1.0 O A:HOH164 4.0 41.5 1.0 CB A:ASP59 4.6 0.1 1.0 NZ A:LYS62 4.9 0.3 1.0

Cadmium binding site 2 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd14 b:0.2 occ:1.00 O C:HOH179 2.1 61.4 1.0 O A:HOH181 2.6 43.7 1.0 OE1 A:GLN123 4.5 77.7 1.0 NE2 A:GLN123 4.7 78.7 1.0

Cadmium binding site 3 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd18 b:76.5 occ:1.00 O C:HOH185 2.4 35.0 1.0 OD1 A:ASP89 2.5 85.4 1.0 O C:HOH183 2.6 36.4 1.0 CG A:ASP89 3.3 85.0 1.0 CD C:CD19 3.6 69.5 1.0 OD2 A:ASP89 3.7 85.5 1.0 CD C:CD20 4.0 99.7 1.0 CG A:ARG85 4.3 0.3 1.0 CB A:ASP89 4.4 82.5 1.0 CD A:ARG85 4.5 0.9 1.0 CA A:ASP89 4.7 81.6 1.0

Cadmium binding site 4 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd22 b:94.7 occ:1.00 O C:HOH187 2.7 63.8 1.0 CD C:CD21 3.0 0.6 1.0 OE1 A:GLU143 3.2 97.1 1.0 CD A:CD23 3.2 0.2 1.0 OE2 A:GLU143 3.6 92.9 1.0 O A:HOH188 3.6 11.7 1.0 O C:HOH186 3.7 30.6 1.0 NE2 C:HIS88 3.8 97.7 1.0 CD A:GLU143 3.8 95.5 1.0 CE1 C:HIS88 4.1 97.7 1.0 CG C:ARG85 4.2 0.3 1.0 CD C:ARG85 4.6 0.7 1.0 OD1 C:ASP89 4.6 90.9 1.0 CB C:ARG85 4.6 99.0 1.0 OD2 C:ASP89 4.9 91.2 1.0

Cadmium binding site 5 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd23 b:0.2 occ:1.00 O A:HOH188 2.2 11.7 1.0 O C:HOH186 2.8 30.6 1.0 CD C:CD21 3.2 0.6 1.0 CD A:CD22 3.2 94.7 1.0 OE2 A:GLU143 3.7 92.9 1.0 OE1 A:GLU143 4.1 97.1 1.0 O C:HOH187 4.2 63.8 1.0 CD A:GLU143 4.3 95.5 1.0

Cadmium binding site 6 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd162 b:91.3 occ:1.00 OE1 A:GLU82 2.6 0.4 1.0 OE2 A:GLU82 2.6 0.8 1.0 O A:HOH182 2.7 18.0 1.0 CD A:GLU82 2.7 0.8 1.0 CG A:GLU82 3.9 0.2 1.0 O A:HOH178 4.8 2.0 1.0 NZ A:LYS107 4.8 79.1 1.0

Cadmium binding site 7 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd7 b:51.1 occ:1.00 O B:HOH178 2.0 9.3 1.0 OD2 B:ASP59 2.8 0.3 1.0 OD1 B:ASP59 3.0 0.6 1.0 CG B:ASP59 3.2 0.2 1.0 O B:HOH165 3.4 33.0 1.0 O B:HOH166 4.7 49.8 1.0 CB B:ASP59 4.7 0.4 1.0 NZ B:LYS62 4.8 0.4 1.0

Cadmium binding site 8 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd8 b:46.4 occ:1.00 OD2 B:ASP97 2.0 69.4 1.0 O B:HOH179 2.5 15.3 1.0 CG B:ASP97 3.0 69.7 1.0 O B:HOH3 3.2 3.4 1.0 CG1 B:VAL99 3.4 74.1 1.0 OD1 B:ASP97 3.5 69.5 1.0 CB B:ASP97 4.1 68.7 1.0 O C:HOH189 4.5 2.0 1.0 O C:HOH163 4.7 2.0 1.0 CD B:LYS100 4.7 74.7 1.0 CD C:CD162 4.8 42.7 1.0 CE B:LYS100 4.8 77.2 1.0 CB B:VAL99 4.9 74.0 1.0 NZ B:LYS100 4.9 78.9 1.0

Cadmium binding site 9 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd12 b:0.8 occ:1.00 O B:HOH173 4.4 36.5 1.0 O B:HOH180 4.5 69.0 1.0 O D:HOH177 4.5 45.1 1.0 ND1 B:HIS119 4.6 57.2 1.0

Cadmium binding site 10 out of 22 in the The Crystal Structure E. Coli Spy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of The Crystal Structure E. Coli Spy within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd15 b:0.2 occ:1.00 OE1 B:GLU82 2.6 97.9 1.0 O B:HOH181 2.8 27.0 1.0 CD B:GLU82 3.6 0.5 1.0 OE2 B:GLU82 4.0 0.5 1.0 CG B:GLU82 4.9 99.2 1.0

E.Kwon, D.Y.Kim, C.A.Gross, J.D.Gross, K.K.Kim. The Crystal Structure Escherichia Coli Spy. Protein Sci. V. 19 2252 2010.
ISSN: ISSN 0961-8368
PubMed: 20799348
DOI: 10.1002/PRO.489