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Cadmium in PDB 3t5o: Crystal Structure of Human Complement Component C6

Protein crystallography data

The structure of Crystal Structure of Human Complement Component C6, PDB code: 3t5o was solved by A.E.Aleshin, B.Stec, L.A.Bankston, R.G.Discipio, R.C.Liddington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.06 / 2.87
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 146.810, 180.150, 60.530, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 27.6

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Human Complement Component C6 (pdb code 3t5o). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Human Complement Component C6, PDB code: 3t5o:

Cadmium binding site 1 out of 1 in 3t5o

Go back to Cadmium Binding Sites List in 3t5o
Cadmium binding site 1 out of 1 in the Crystal Structure of Human Complement Component C6


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Human Complement Component C6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1001

b:0.8
occ:1.00
O A:GLU140 2.4 0.8 1.0
OD1 A:ASN138 2.4 98.1 1.0
O A:LEU135 2.4 0.1 1.0
OD2 A:ASP142 2.4 0.9 1.0
OE1 A:GLU149 2.4 83.8 1.0
OD1 A:ASP148 2.4 0.6 1.0
CG A:ASN138 3.1 96.3 1.0
CG A:ASP148 3.4 0.1 1.0
ND2 A:ASN138 3.5 91.9 1.0
CG A:ASP142 3.5 0.9 1.0
C A:GLU140 3.5 79.4 1.0
CD A:GLU149 3.6 94.5 1.0
C A:LEU135 3.6 93.6 1.0
CB A:ASP142 3.9 87.2 1.0
N A:GLU140 3.9 75.5 1.0
OD2 A:ASP148 4.0 1.0 1.0
N A:ASP142 4.0 75.5 1.0
OE2 A:GLU149 4.1 93.3 1.0
CA A:GLU140 4.1 75.0 1.0
N A:ASN138 4.1 0.1 1.0
CB A:ASN138 4.3 85.2 1.0
CB A:GLU140 4.3 80.8 1.0
O A:ASP148 4.3 86.0 1.0
CA A:GLU136 4.3 86.0 1.0
N A:GLU136 4.4 90.3 1.0
C A:GLU136 4.5 95.4 1.0
CA A:ASN138 4.6 87.7 1.0
CB A:ASP148 4.6 91.4 1.0
N A:CYS137 4.6 87.8 1.0
N A:ASN141 4.6 73.6 1.0
CA A:ASP142 4.6 77.4 1.0
CA A:LEU135 4.6 97.1 1.0
OD1 A:ASP142 4.6 0.8 1.0
C A:ASN138 4.6 98.8 1.0
N A:GLY139 4.8 89.9 1.0
CB A:LEU135 4.8 98.9 1.0
CG A:GLU149 4.8 90.3 1.0
C A:ASN141 4.9 79.4 1.0
CA A:ASN141 4.9 82.2 1.0
C A:ASP148 4.9 90.3 1.0
CB A:GLU149 5.0 78.1 1.0

Reference:

A.E.Aleshin, I.U.Schraufstatter, B.Stec, L.A.Bankston, R.C.Liddington, R.G.Discipio. Structure of Complement C6 Suggests A Mechanism For Initiation and Unidirectional, Sequential Assembly of Membrane Attack Complex (Mac). J.Biol.Chem. V. 287 10210 2012.
ISSN: ISSN 0021-9258
PubMed: 22267737
DOI: 10.1074/JBC.M111.327809
Page generated: Sat Dec 12 08:23:12 2020

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