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Cadmium in PDB 3uk8: The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii

Enzymatic activity of The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii

All present enzymatic activity of The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii:
4.2.1.1;

Protein crystallography data

The structure of The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii, PDB code: 3uk8 was solved by V.Alterio, G.De Simone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 118.790, 62.690, 75.210, 90.00, 120.44, 90.00
R / Rfree (%) 18.2 / 21

Cadmium Binding Sites:

The binding sites of Cadmium atom in the The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii (pdb code 3uk8). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii, PDB code: 3uk8:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 3uk8

Go back to Cadmium Binding Sites List in 3uk8
Cadmium binding site 1 out of 2 in the The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd700

b:17.0
occ:1.00
NE2 A:HIS525 2.3 18.3 1.0
O A:HOH1050 2.3 12.2 1.0
OXT A:ACT800 2.4 19.3 1.0
SG A:CYS473 2.5 17.1 1.0
SG A:CYS535 2.5 18.4 1.0
CE1 A:HIS525 3.1 19.0 1.0
C A:ACT800 3.3 20.5 1.0
CD2 A:HIS525 3.4 18.1 1.0
CB A:CYS535 3.4 19.8 1.0
CB A:CYS473 3.5 16.6 1.0
CA A:CYS535 3.5 19.9 1.0
O A:ACT800 3.6 22.8 1.0
N A:GLY536 3.8 21.4 1.0
C A:CYS535 3.9 20.4 1.0
CA A:GLY491 4.1 13.4 1.0
N A:GLY491 4.2 13.4 1.0
N A:PHE537 4.2 21.6 1.0
OD2 A:ASP475 4.2 19.5 1.0
ND1 A:HIS525 4.3 15.1 1.0
CB A:ASP475 4.4 20.7 1.0
CG A:HIS525 4.4 18.2 1.0
O A:HOH1015 4.5 20.2 1.0
CB A:PHE537 4.5 20.8 1.0
CH3 A:ACT800 4.6 18.6 1.0
CG A:ASP475 4.8 20.6 1.0
CA A:GLY536 4.8 20.7 1.0
N A:CYS535 4.9 20.7 1.0
O A:CYS535 4.9 20.9 1.0
CA A:CYS473 4.9 16.0 1.0
CA A:PHE537 5.0 20.9 1.0

Cadmium binding site 2 out of 2 in 3uk8

Go back to Cadmium Binding Sites List in 3uk8
Cadmium binding site 2 out of 2 in the The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Crystal Structure of the Cd-Bound Domain 3 of the Cadmium Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflogii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd700

b:16.2
occ:1.00
NE2 B:HIS525 2.4 18.6 1.0
SG B:CYS535 2.5 12.2 1.0
OXT B:ACT800 2.5 17.3 1.0
SG B:CYS473 2.5 18.4 1.0
O B:HOH1046 2.5 11.4 1.0
CE1 B:HIS525 3.3 16.2 1.0
C B:ACT800 3.3 15.7 1.0
CD2 B:HIS525 3.4 18.2 1.0
CB B:CYS535 3.4 15.6 1.0
CB B:CYS473 3.4 16.1 1.0
CA B:CYS535 3.5 17.4 1.0
O B:ACT800 3.5 16.5 1.0
N B:GLY536 3.8 14.8 1.0
C B:CYS535 3.9 15.3 1.0
CA B:GLY491 4.1 17.1 1.0
N B:GLY491 4.2 16.1 1.0
N B:PHE537 4.2 15.4 1.0
OD2 B:ASP475 4.3 18.1 1.0
CB B:ASP475 4.4 18.1 1.0
ND1 B:HIS525 4.4 14.8 1.0
CG B:HIS525 4.5 17.4 1.0
CB B:PHE537 4.5 14.1 1.0
O B:HOH1015 4.6 7.1 1.0
CH3 B:ACT800 4.6 15.7 1.0
O B:CYS535 4.7 15.4 1.0
CA B:GLY536 4.8 14.5 1.0
CG B:ASP475 4.9 19.3 1.0
N B:CYS535 4.9 19.0 1.0
CA B:CYS473 4.9 16.4 1.0
CA B:PHE537 5.0 14.7 1.0

Reference:

V.Alterio, E.Langella, F.Viparelli, D.Vullo, G.Ascione, N.A.Dathan, F.M.Morel, C.T.Supuran, G.De Simone, S.M.Monti. Structural and Inhibition Insights Into Carbonic Anhydrase CDCA1 From the Marine Diatom Thalassiosira Weissflogii. Biochimie V. 94 1232 2012.
ISSN: ISSN 0300-9084
PubMed: 22381359
DOI: 10.1016/J.BIOCHI.2012.02.013
Page generated: Fri Aug 28 14:03:03 2020
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