Cadmium in PDB 3vg3: Cadmium Derivative of Human Lfabp

The structure of Cadmium Derivative of Human Lfabp, PDB code: 3vg3 was solved by A.Sharma, M.Yogavel, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.22
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	30.147, 57.246, 73.213, 90.00, 90.00, 90.00
R / Rfree (%)	23.3 / 30

The binding sites of Cadmium atom in the Cadmium Derivative of Human Lfabp (pdb code 3vg3). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Cadmium Derivative of Human Lfabp, PDB code: 3vg3:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Cadmium Derivative of Human Lfabp


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Cadmium Derivative of Human Lfabp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd130 b:69.0 occ:0.40 O A:HOH136 3.2 42.8 1.0 O A:GLU68 3.6 48.3 1.0 CA A:CYS69 4.0 47.4 1.0 CB A:CYS69 4.0 47.7 1.0 N A:THR64 4.4 41.6 1.0 OG1 A:THR64 4.5 42.3 1.0 CA A:PHE63 4.5 42.8 1.0 C A:GLU68 4.6 47.0 1.0 N A:CYS69 4.8 47.3 1.0 C A:PHE63 4.9 42.3 1.0

Cadmium binding site 2 out of 2 in the Cadmium Derivative of Human Lfabp


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Cadmium Derivative of Human Lfabp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd131 b:75.3 occ:0.30 OD1 A:ASP88 2.9 56.3 1.0 OD2 A:ASP88 3.6 55.3 1.0 CG A:ASP88 3.6 52.8 1.0 O A:HOH139 4.7 66.2 1.0

A.Sharma, M.Yogavel, A.Sharma. Utility of Anion and Cation Combinations For Phasing of Protein Structures. J.Struct.Funct.Genom. V. 13 135 2012.
ISSN: ISSN 1345-711X
PubMed: 22562242
DOI: 10.1007/S10969-012-9137-3