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Cadmium in PDB 3vg4: Cadmium Derivative of Human Lfabp

Protein crystallography data

The structure of Cadmium Derivative of Human Lfabp, PDB code: 3vg4 was solved by A.Sharma, M.Yogavel, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 29.938, 57.535, 72.925, 90.00, 90.00, 90.00
R / Rfree (%) 23 / 31

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Cadmium Derivative of Human Lfabp (pdb code 3vg4). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Cadmium Derivative of Human Lfabp, PDB code: 3vg4:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 3vg4

Go back to Cadmium Binding Sites List in 3vg4
Cadmium binding site 1 out of 2 in the Cadmium Derivative of Human Lfabp


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Cadmium Derivative of Human Lfabp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd130

b:78.0
occ:0.70
CB A:CYS69 3.5 62.5 1.0
CA A:CYS69 3.8 62.0 1.0
O A:GLU68 4.1 61.5 1.0
N A:THR64 4.4 51.7 1.0
N A:CYS69 4.6 61.1 1.0
C A:GLU68 4.7 61.0 1.0
OG1 A:THR64 4.7 51.7 1.0
CA A:PHE63 4.7 52.4 1.0
O A:GLU62 4.8 54.2 1.0

Cadmium binding site 2 out of 2 in 3vg4

Go back to Cadmium Binding Sites List in 3vg4
Cadmium binding site 2 out of 2 in the Cadmium Derivative of Human Lfabp


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Cadmium Derivative of Human Lfabp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd131

b:77.8
occ:0.30
OD1 A:ASP88 2.6 74.8 1.0
CG A:ASP88 3.4 72.3 1.0
OD2 A:ASP88 3.7 76.5 1.0
CB A:ASP88 4.5 68.2 1.0
CA A:ASP88 4.9 66.7 1.0

Reference:

A.Sharma, M.Yogavel, A.Sharma. Utility of Anion and Cation Combinations For Phasing of Protein Structures. J.Struct.Funct.Genom. V. 13 135 2012.
ISSN: ISSN 1345-711X
PubMed: 22562242
DOI: 10.1007/S10969-012-9137-3
Page generated: Fri Aug 28 14:04:26 2020
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