Atomistry » Cadmium » PDB 3umi-3zi7 » 3wa4
Atomistry »
  Cadmium »
    PDB 3umi-3zi7 »
      3wa4 »

Cadmium in PDB 3wa4: GRB2 SH2 Domain/CD28-Derived Peptide Complex

Protein crystallography data

The structure of GRB2 SH2 Domain/CD28-Derived Peptide Complex, PDB code: 3wa4 was solved by K.Higo, M.Oda, N.Ito, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.54 / 1.35
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 59.010, 59.010, 117.090, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 20.9

Cadmium Binding Sites:

The binding sites of Cadmium atom in the GRB2 SH2 Domain/CD28-Derived Peptide Complex (pdb code 3wa4). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the GRB2 SH2 Domain/CD28-Derived Peptide Complex, PDB code: 3wa4:

Cadmium binding site 1 out of 1 in 3wa4

Go back to Cadmium Binding Sites List in 3wa4
Cadmium binding site 1 out of 1 in the GRB2 SH2 Domain/CD28-Derived Peptide Complex


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of GRB2 SH2 Domain/CD28-Derived Peptide Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:15.9
occ:1.00
NE2 A:HIS79 2.3 14.0 1.0
O A:ACY202 2.3 21.0 1.0
OXT A:ACY202 2.4 19.6 1.0
OE1 A:GLU152 2.5 31.4 1.0
OE2 A:GLU152 2.6 26.9 1.0
C A:ACY202 2.7 15.9 1.0
CD A:GLU152 2.9 20.4 1.0
CD2 A:HIS79 3.2 14.2 1.0
CE1 A:HIS79 3.3 16.7 1.0
NH2 A:ARG149 4.2 14.8 1.0
CH3 A:ACY202 4.3 20.1 1.0
ND1 A:HIS79 4.4 15.5 1.0
CG A:HIS79 4.4 13.3 1.0
CG A:GLU152 4.4 19.9 1.0
NE A:ARG78 4.8 26.7 1.0
NH2 A:ARG78 4.9 27.3 1.0

Reference:

K.Higo, T.Ikura, M.Oda, H.Morii, J.Takahashi, R.Abe, N.Ito. High Resolution Crystal Structure of the GRB2 SH2 Domain with A Phosphopeptide Derived From CD28 Plos One V. 8 74482 2013.
ISSN: ESSN 1932-6203
PubMed: 24098653
DOI: 10.1371/JOURNAL.PONE.0074482
Page generated: Sat Dec 12 08:23:34 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy