Atomistry » Cadmium » PDB 3umi-3zi7 » 3wvw
Atomistry »
  Cadmium »
    PDB 3umi-3zi7 »
      3wvw »

Cadmium in PDB 3wvw: Crystal Structure of Ruco/Apo-Wtfr

Protein crystallography data

The structure of Crystal Structure of Ruco/Apo-Wtfr, PDB code: 3wvw was solved by K.Fujita, Y.Tanaka, S.Abe, T.Hikage, T.Kuchimaru, S.Kizaka-Kondoh, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.43 / 2.00
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.863, 181.863, 181.863, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 19.9

Other elements in 3wvw:

The structure of Crystal Structure of Ruco/Apo-Wtfr also contains other interesting chemical elements:

Ruthenium (Ru) 3 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Ruco/Apo-Wtfr (pdb code 3wvw). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Ruco/Apo-Wtfr, PDB code: 3wvw:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 3wvw

Go back to Cadmium Binding Sites List in 3wvw
Cadmium binding site 1 out of 3 in the Crystal Structure of Ruco/Apo-Wtfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Ruco/Apo-Wtfr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:48.1
occ:0.10
OE1 A:GLU130 2.5 36.1 1.0
CD A:GLU130 3.3 24.1 1.0
OE2 A:GLU130 3.3 21.1 1.0
CD A:CD202 4.3 78.6 0.3
RU A:RU213 4.3 46.1 0.4
OD1 A:ASP127 4.7 30.5 1.0
CG A:GLU130 4.8 21.8 1.0

Cadmium binding site 2 out of 3 in 3wvw

Go back to Cadmium Binding Sites List in 3wvw
Cadmium binding site 2 out of 3 in the Crystal Structure of Ruco/Apo-Wtfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Ruco/Apo-Wtfr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd202

b:78.6
occ:0.33
OD1 A:ASP127 2.7 30.5 1.0
OE1 A:GLU130 3.8 36.1 1.0
CG A:ASP127 3.9 28.8 1.0
CD A:CD201 4.3 48.1 0.1
OD2 A:ASP127 4.6 27.8 1.0
CB A:GLU130 4.8 20.6 1.0
CD A:GLU130 5.0 24.1 1.0

Cadmium binding site 3 out of 3 in 3wvw

Go back to Cadmium Binding Sites List in 3wvw
Cadmium binding site 3 out of 3 in the Crystal Structure of Ruco/Apo-Wtfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Ruco/Apo-Wtfr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd203

b:30.9
occ:0.50
OD2 A:ASP80 2.1 31.1 1.0
OD1 A:ASP80 2.7 23.2 1.0
CG A:ASP80 2.9 21.9 1.0
CB A:ASP80 4.3 24.5 1.0
O A:HOH405 4.6 28.7 1.0

Reference:

K.Fujita, Y.Tanaka, T.Sho, S.Ozeki, S.Abe, T.Hikage, T.Kuchimaru, S.Kizaka-Kondoh, T.Ueno. Intracellular Co Release From Composite of Ferritin and Ruthenium Carbonyl Complexes. J.Am.Chem.Soc. V. 136 16902 2014.
ISSN: ISSN 0002-7863
PubMed: 25352251
DOI: 10.1021/JA508938F
Page generated: Sun Jan 24 09:56:20 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy