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Cadmium in PDB 3zet: Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer.

Protein crystallography data

The structure of Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer., PDB code: 3zet was solved by C.E.Nichols, H.K.Lamb, P.Thompson, K.El Omari, M.Lockyer, I.Charles, A.R.Hawkins, D.K.Stammers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.38 / 2.31
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.152, 61.663, 83.835, 90.00, 101.14, 90.00
R / Rfree (%) 17.81 / 23.47

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer. (pdb code 3zet). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer., PDB code: 3zet:

Cadmium binding site 1 out of 1 in 3zet

Go back to Cadmium Binding Sites List in 3zet
Cadmium binding site 1 out of 1 in the Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd401

b:22.2
occ:1.00
O B:HOH2048 2.2 17.9 1.0
NE2 B:HIS111 2.3 19.3 1.0
OD1 B:ASP300 2.3 22.8 1.0
NE2 B:HIS115 2.3 16.3 1.0
O3P B:AMP400 2.3 28.6 1.0
O B:HOH2047 2.4 13.2 1.0
CE1 B:HIS111 3.0 18.9 1.0
CE1 B:HIS115 3.2 15.9 1.0
CG B:ASP300 3.3 24.6 1.0
P B:AMP400 3.3 34.6 1.0
CD2 B:HIS115 3.3 16.9 1.0
CD2 B:HIS111 3.5 19.8 1.0
O1P B:AMP400 3.6 36.6 1.0
OD2 B:ASP300 3.7 27.0 1.0
O2P B:AMP400 3.8 38.0 1.0
O B:HOH2092 4.1 18.3 1.0
ND1 B:HIS111 4.2 20.2 1.0
ND1 B:HIS115 4.4 16.7 1.0
CG B:HIS111 4.4 18.6 1.0
CG B:HIS115 4.5 15.7 1.0
CB B:ASP300 4.7 16.6 1.0
OG B:SER136 4.7 46.3 1.0
O5' B:AMP400 4.7 38.1 1.0
N B:ASP300 4.8 19.2 1.0
CA B:ASP300 4.9 16.9 1.0

Reference:

C.E.Nichols, H.K.Lamb, P.Thompson, K.E.Omari, M.Lockyer, I.Charles, A.R.Hawkins, D.K.Stammers. Crystal Structure of the Dimer of Two Essential Salmonella Typhimurium Proteins, Ygjd & Yeaz and Calorimetric Evidence For the Formation of A Ternary Ygjd-Yeaz-Yjee Complex. Protein Sci. V. 22 628 2013.
ISSN: ISSN 0961-8368
PubMed: 23471679
DOI: 10.1002/PRO.2247
Page generated: Sun Jan 24 09:56:22 2021

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