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Cadmium in PDB 4aps: Crystal Structure of A Pot Family Peptide Transporter in An Inward Open Conformation.

Protein crystallography data

The structure of Crystal Structure of A Pot Family Peptide Transporter in An Inward Open Conformation., PDB code: 4aps was solved by N.Solcan, J.Kwok, P.W.Fowler, A.D.Cameron, D.Drew, S.Iwata, S.Newstead, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.62 / 3.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 89.390, 112.990, 215.490, 90.00, 90.00, 90.00
R / Rfree (%) 27.22 / 28.95

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of A Pot Family Peptide Transporter in An Inward Open Conformation. (pdb code 4aps). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of A Pot Family Peptide Transporter in An Inward Open Conformation., PDB code: 4aps:

Cadmium binding site 1 out of 1 in 4aps

Go back to Cadmium Binding Sites List in 4aps
Cadmium binding site 1 out of 1 in the Crystal Structure of A Pot Family Peptide Transporter in An Inward Open Conformation.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of A Pot Family Peptide Transporter in An Inward Open Conformation. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1472

b:99.4
occ:1.00
OD2 B:ASP202 2.3 0.6 1.0
CG B:ASP202 3.0 0.4 1.0
OD1 B:ASP202 3.3 0.2 1.0
CB B:ASP202 4.2 0.4 1.0
N B:PRO203 4.4 0.9 1.0
CD B:PRO203 4.5 0.1 1.0
C B:ASP202 4.6 0.1 1.0
CA B:ASP202 4.8 0.3 1.0

Reference:

N.Solcan, J.Kwok, P.W.Fowler, A.D.Cameron, D.Drew, S.Iwata, S.Newstead. Alternating Access Mechanism in the Pot Family of Oligopeptide Transporters. Embo J. V. 31 3411 2012.
ISSN: ISSN 0261-4189
PubMed: 22659829
DOI: 10.1038/EMBOJ.2012.157
Page generated: Fri Aug 28 14:13:43 2020
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