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Cadmium in PDB 4aq4: Substrate Bound Sn-Glycerol-3-Phosphate Binding Periplasmic Protein Ugpb From Escherichia Coli

Protein crystallography data

The structure of Substrate Bound Sn-Glycerol-3-Phosphate Binding Periplasmic Protein Ugpb From Escherichia Coli, PDB code: 4aq4 was solved by S.Wuttge, M.Bommer, F.Jaeger, B.M.Martins, S.Jacob, A.Licht, F.Scheffel, H.Dobbek, E.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.37 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 49.346, 49.346, 406.894, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 19.2

Other elements in 4aq4:

The structure of Substrate Bound Sn-Glycerol-3-Phosphate Binding Periplasmic Protein Ugpb From Escherichia Coli also contains other interesting chemical elements:

Cobalt (Co) 1 atom
Magnesium (Mg) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Substrate Bound Sn-Glycerol-3-Phosphate Binding Periplasmic Protein Ugpb From Escherichia Coli (pdb code 4aq4). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Substrate Bound Sn-Glycerol-3-Phosphate Binding Periplasmic Protein Ugpb From Escherichia Coli, PDB code: 4aq4:

Cadmium binding site 1 out of 1 in 4aq4

Go back to Cadmium Binding Sites List in 4aq4
Cadmium binding site 1 out of 1 in the Substrate Bound Sn-Glycerol-3-Phosphate Binding Periplasmic Protein Ugpb From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Substrate Bound Sn-Glycerol-3-Phosphate Binding Periplasmic Protein Ugpb From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1418

b:21.8
occ:1.00
OD2 A:ASP31 2.5 15.7 1.0
OD1 A:ASP31 2.5 19.9 1.0
O A:HOH2061 2.6 38.3 1.0
O A:HOH2060 2.7 32.8 1.0
CG A:ASP31 2.8 17.5 1.0
CB A:ASP31 4.3 16.1 1.0
O A:HOH2059 4.7 45.5 1.0
O A:HOH2057 4.8 19.5 1.0
CA A:ASP31 5.0 18.2 1.0

Reference:

S.Wuttge, M.Bommer, F.Jager, B.M.Martins, S.Jacob, A.Licht, F.Scheffel, H.Dobbek, E.Schneider. Determinants of Substrate Specificity and Biochemical Properties of the Sn-Glycerol-3-Phosphate Atp Binding Cassette Transporter (Ugpb-Aec(2) ) of Escherichia Coli. Mol.Microbiol. V. 86 908 2012.
ISSN: ISSN 0950-382X
PubMed: 23013274
DOI: 10.1111/MMI.12025
Page generated: Sat Dec 12 08:23:57 2020

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