Atomistry » Cadmium » PDB 3zr9-4efp » 4c3d
Atomistry »
  Cadmium »
    PDB 3zr9-4efp »
      4c3d »

Cadmium in PDB 4c3d: Hrsv M2-1, P422 Crystal Form

Protein crystallography data

The structure of Hrsv M2-1, P422 Crystal Form, PDB code: 4c3d was solved by S.J.Tanner, A.Ariza, C.A.Richard, W.Wu, J.Trincao, J.A.Hiscox, M.W.Carroll, N.J.Silman, J.F.Eleouet, T.A.Edwards, J.N.Barr, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.74 / 2.52
Space group P 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 102.275, 102.275, 90.993, 90.00, 90.00, 90.00
R / Rfree (%) 21.095 / 26.323

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Hrsv M2-1, P422 Crystal Form (pdb code 4c3d). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Hrsv M2-1, P422 Crystal Form, PDB code: 4c3d:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 4c3d

Go back to Cadmium Binding Sites List in 4c3d
Cadmium binding site 1 out of 4 in the Hrsv M2-1, P422 Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Hrsv M2-1, P422 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:41.1
occ:1.00
NE2 A:HIS25 2.2 47.0 1.0
SG A:CYS15 2.3 41.8 1.0
SG A:CYS21 2.5 49.6 1.0
SG A:CYS7 2.6 40.9 1.0
CE1 A:HIS25 3.1 49.0 1.0
CB A:CYS15 3.3 45.0 1.0
CD2 A:HIS25 3.3 43.7 1.0
CB A:CYS7 3.3 39.4 1.0
CB A:CYS21 3.4 52.1 1.0
ND1 A:HIS25 4.3 40.4 1.0
CG A:HIS25 4.4 39.5 1.0
CA A:CYS15 4.6 40.4 1.0
CA A:CYS7 4.7 36.5 1.0
CB A:PHE23 4.7 46.0 1.0
CD2 A:PHE9 4.8 37.2 1.0
CB A:PHE9 4.8 36.9 1.0
CB A:ASN17 4.8 50.7 1.0
CA A:CYS21 4.8 65.3 1.0
O A:PHE23 4.9 57.9 1.0

Cadmium binding site 2 out of 4 in 4c3d

Go back to Cadmium Binding Sites List in 4c3d
Cadmium binding site 2 out of 4 in the Hrsv M2-1, P422 Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Hrsv M2-1, P422 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd301

b:49.9
occ:1.00
O A:HOH2021 2.2 64.8 1.0
O A:HOH2020 2.3 47.6 1.0
ND1 A:HIS14 2.3 43.0 1.0
OE1 A:GLU10 2.5 39.2 1.0
OE2 A:GLU10 2.6 38.6 1.0
O A:HOH2018 2.8 42.1 1.0
O A:HOH2039 2.8 47.6 1.0
CD A:GLU10 2.9 38.6 1.0
CE1 A:HIS14 3.1 41.2 1.0
CG A:HIS14 3.5 42.0 1.0
CB A:HIS14 3.9 39.9 1.0
CA A:HIS14 3.9 43.3 1.0
OH A:TYR27 4.1 36.5 1.0
NE2 A:HIS14 4.3 35.8 1.0
CG A:GLU10 4.4 32.0 1.0
N A:CYS15 4.4 45.8 1.0
CD2 A:HIS14 4.5 38.4 1.0
O A:GLY13 4.5 34.8 1.0
C A:HIS14 4.7 38.6 1.0
NH2 A:ARG38 4.8 34.5 1.0

Cadmium binding site 3 out of 4 in 4c3d

Go back to Cadmium Binding Sites List in 4c3d
Cadmium binding site 3 out of 4 in the Hrsv M2-1, P422 Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Hrsv M2-1, P422 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd201

b:51.0
occ:1.00
NE2 B:HIS25 2.2 60.3 1.0
SG B:CYS15 2.2 45.1 1.0
SG B:CYS21 2.5 58.6 1.0
SG B:CYS7 2.7 47.7 1.0
CE1 B:HIS25 3.0 61.2 1.0
CB B:CYS15 3.2 47.0 1.0
CD2 B:HIS25 3.3 57.3 1.0
CB B:CYS21 3.3 60.0 1.0
CB B:CYS7 3.4 42.9 1.0
ND1 B:HIS25 4.2 53.3 1.0
CG B:HIS25 4.3 50.0 1.0
CA B:CYS15 4.6 43.0 1.0
CA B:CYS21 4.8 59.9 1.0
CB B:PHE23 4.8 54.4 1.0
CA B:CYS7 4.8 41.5 1.0
CB B:ASN17 4.8 55.4 1.0
O B:PHE23 4.9 52.5 1.0
CB B:PHE9 4.9 47.9 1.0
CD2 B:PHE9 4.9 51.4 1.0

Cadmium binding site 4 out of 4 in 4c3d

Go back to Cadmium Binding Sites List in 4c3d
Cadmium binding site 4 out of 4 in the Hrsv M2-1, P422 Crystal Form


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Hrsv M2-1, P422 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd301

b:56.6
occ:1.00
ND1 B:HIS14 2.3 46.5 1.0
OE1 B:GLU10 2.6 43.9 1.0
OE2 B:GLU10 2.7 43.3 1.0
O B:HOH2012 2.7 54.9 1.0
O B:HOH2009 2.8 63.7 1.0
O B:HOH2010 2.8 66.8 1.0
CD B:GLU10 3.0 44.0 1.0
CE1 B:HIS14 3.0 45.0 1.0
O B:HOH2011 3.2 61.9 1.0
CG B:HIS14 3.5 42.2 1.0
CB B:HIS14 4.0 42.2 1.0
OH B:TYR27 4.0 41.1 1.0
CA B:HIS14 4.1 49.5 1.0
NE2 B:HIS14 4.2 41.1 1.0
CG B:GLU10 4.4 44.3 1.0
CD2 B:HIS14 4.5 37.6 1.0
N B:CYS15 4.6 44.4 1.0
O B:GLY13 4.6 46.6 1.0
C B:HIS14 4.8 44.0 1.0
NH2 B:ARG38 4.9 44.5 1.0

Reference:

S.J.Tanner, A.Ariza, C.Richard, H.F.Kyle, R.L.Dods, M.Blondot, W.Wu, J.Trincao, C.H.Trinh, J.A.Hiscox, M.W.Carroll, N.J.Silman, J.Eleouet, T.A.Edwards, J.N.Barr. Crystal Structure of the Essential Transcription Antiterminator M2-1 Protein of Human Respiratory Syncytial Virus and Implications of Its Phosphorylation. Proc.Natl.Acad.Sci.Usa V. 111 1580 2014.
ISSN: ISSN 0027-8424
PubMed: 24434552
DOI: 10.1073/PNAS.1317262111
Page generated: Sat Dec 12 08:24:11 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy