Cadmium in the structure of Spfh Domain of Mouse Stomatin (Crystal Form 3) (pdb 4fvg)

The binding sites of Cadmium atom in the structure of Spfh Domain of Mouse Stomatin (Crystal Form 3) (pdb code 4fvg). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom. The 4fvg structure was solved by J.BRAND, D.SCHWEFEL, O.DAUMKE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 73.2-1.8 Space group P6422 a (A) 84.489 b (A) 84.489 c (A) 68.937 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 19.4 Rfree (%) 24.5 Cadmium Binding Sites: Cadmium binding site 1 out of 2 in 4fvg Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 4fvg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu169, A: His172, A: His173, A: Cd302, A: Hoh435, A: Hoh436, A: Hoh488, conact list: Atom Atom Distance (A) Cd O A:Glu169 5.00 Cd OE1 A:Glu169 2.14 Cd CB A:Glu169 4.55 Cd OE2 A:Glu169 1.97 Cd CD A:Glu169 2.15 Cd CG A:Glu169 3.44 Cd CA A:Glu169 4.78 Cd NE2 A:His172 3.90 Cd CB A:His172 4.90 Cd CB A:His172 4.33 Cd ND1 A:His172 2.56 Cd CD2 A:His172 4.28 Cd CE1 A:His172 2.88 Cd CG A:His172 3.58 Cd NE2 A:His173 2.48 Cd ND1 A:His173 4.56 Cd CD2 A:His173 3.35 Cd CE1 A:His173 3.50 Cd CG A:His173 4.54 Cd CD A:Cd302 3.56 Cd O A:Hoh435 4.82 Cd O A:Hoh436 4.22 Cd O A:Hoh488 3.74 interactive model: Cadmium binding site 2 out of 2 in 4fvg Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 4fvg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu169, A: His172, A: Cd301, A: Hoh436, A: Hoh488, conact list: Atom Atom Distance (A) Cd OE1 A:Glu169 4.55 Cd OE2 A:Glu169 2.97 Cd CD A:Glu169 4.10 Cd CA A:Glu169 4.95 Cd NE2 A:His172 4.35 Cd NE2 A:His172 3.98 Cd CB A:His172 3.62 Cd CB A:His172 3.35 Cd ND1 A:His172 2.28 Cd ND1 A:His172 2.14 Cd CD2 A:His172 4.42 Cd CD2 A:His172 3.97 Cd CE1 A:His172 3.20 Cd CE1 A:His172 3.02 Cd CG A:His172 3.30 Cd CG A:His172 2.97 Cd CA A:His172 4.90 Cd CD A:Cd301 3.56 Cd O A:Hoh436 2.67 Cd O A:Hoh488 2.25 interactive model: