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Cadmium in PDB 4gwn: Crystal Structure of Human Mature Meprin Beta

Enzymatic activity of Crystal Structure of Human Mature Meprin Beta

All present enzymatic activity of Crystal Structure of Human Mature Meprin Beta:
3.4.24.63;

Protein crystallography data

The structure of Crystal Structure of Human Mature Meprin Beta, PDB code: 4gwn was solved by J.L.Arolas, C.Broder, T.Jefferson, T.Guevara, E.E.Sterchi, W.Bode, W.Stocker, C.Becker-Pauly, F.X.Gomis-Ruth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.16 / 3.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 74.960, 74.960, 502.650, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 23.8

Other elements in 4gwn:

The structure of Crystal Structure of Human Mature Meprin Beta also contains other interesting chemical elements:

Sodium (Na) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Human Mature Meprin Beta (pdb code 4gwn). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Human Mature Meprin Beta, PDB code: 4gwn:

Cadmium binding site 1 out of 1 in 4gwn

Go back to Cadmium Binding Sites List in 4gwn
Cadmium binding site 1 out of 1 in the Crystal Structure of Human Mature Meprin Beta


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Human Mature Meprin Beta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd701

b:0.1
occ:1.00
NE2 A:HIS162 2.6 0.8 1.0
NE2 A:HIS156 2.6 0.8 1.0
NE2 A:HIS152 2.7 94.1 1.0
CD2 A:HIS156 3.2 0.4 1.0
CD2 A:HIS152 3.2 94.2 1.0
CE1 A:HIS162 3.5 0.1 1.0
OE2 A:GLU153 3.5 0.4 1.0
CD2 A:HIS162 3.6 0.4 1.0
CE1 A:HIS156 3.8 0.5 1.0
OE1 A:GLU153 3.9 0.7 1.0
CE1 A:HIS152 3.9 92.5 1.0
CD A:GLU153 4.0 0.0 1.0
OH A:TYR211 4.1 0.1 1.0
CG A:HIS156 4.5 0.6 1.0
CG A:HIS152 4.5 91.2 1.0
CE1 A:TYR211 4.5 98.6 1.0
ND1 A:HIS162 4.6 0.3 1.0
CG A:HIS162 4.7 99.4 1.0
ND1 A:HIS156 4.8 0.4 1.0
CZ A:TYR211 4.8 0.1 1.0
ND1 A:HIS152 4.8 92.2 1.0
OD1 A:ASN187 4.9 93.1 1.0

Reference:

J.L.Arolas, C.Broder, T.Jefferson, T.Guevara, E.E.Sterchi, W.Bode, W.Stocker, C.Becker-Pauly, F.X.Gomis-Ruth. Structural Basis For the Sheddase Function of Human Meprin Beta Metalloproteinase at the Plasma Membrane Proc.Natl.Acad.Sci.Usa V. 109 16131 2012.
ISSN: ISSN 0027-8424
PubMed: 22988105
DOI: 10.1073/PNAS.1211076109
Page generated: Sat Dec 12 08:24:39 2020

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