Atomistry » Cadmium » PDB 4evc-4l1l » 4h0l
Atomistry »
  Cadmium »
    PDB 4evc-4l1l »
      4h0l »

Cadmium in PDB 4h0l: Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno

Enzymatic activity of Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno

All present enzymatic activity of Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno:
1.10.9.1;

Protein crystallography data

The structure of Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno, PDB code: 4h0l was solved by S.S.Hasan, E.Yamashita, D.Baniulis, W.A.Cramer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.45 / 3.25
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 159.133, 159.133, 362.250, 90.00, 90.00, 120.00
R / Rfree (%) 21.8 / 24.7

Other elements in 4h0l:

The structure of Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Iron (Fe) 6 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno (pdb code 4h0l). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno, PDB code: 4h0l:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 4h0l

Go back to Cadmium Binding Sites List in 4h0l
Cadmium binding site 1 out of 2 in the Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd301

b:83.1
occ:1.00
OE2 A:GLU75 1.9 71.6 1.0
NE2 C:HIS143 2.3 90.5 1.0
CD A:GLU75 2.6 82.4 1.0
OE1 A:GLU75 2.6 0.9 1.0
CE1 C:HIS143 3.0 75.0 1.0
HE1 C:HIS143 3.0 90.0 1.0
O A:HOH401 3.1 57.5 1.0
O C:HOH401 3.3 55.5 1.0
CD2 C:HIS143 3.4 76.1 1.0
HD2 C:HIS143 3.7 91.3 1.0
O C:LYS140 3.7 0.1 1.0
HB3 A:ASN74 4.0 69.3 1.0
CG A:GLU75 4.1 64.1 1.0
ND1 C:HIS143 4.1 63.1 1.0
HA C:ASN141 4.3 0.9 1.0
HG2 A:GLU75 4.3 76.9 1.0
CG C:HIS143 4.4 56.5 1.0
HG3 A:GLU75 4.4 76.9 1.0
O A:ASN74 4.6 71.9 1.0
HA A:GLU75 4.7 77.3 1.0
OD1 C:ASN141 4.7 0.8 1.0
HD1 C:HIS143 4.8 75.8 1.0
C C:LYS140 4.9 95.4 1.0
CB A:ASN74 5.0 57.7 1.0

Cadmium binding site 2 out of 2 in 4h0l

Go back to Cadmium Binding Sites List in 4h0l
Cadmium binding site 2 out of 2 in the Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Cytochrome B6F Complex Crystal Structure From Mastigocladus Laminosus with N-Side Inhibitor Nqno within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd201

b:0.2
occ:1.00
OD1 B:ASP58 2.0 94.0 1.0
HZ1 C:LYS146 2.5 75.5 1.0
HZ2 C:LYS146 2.6 75.5 1.0
NZ C:LYS146 3.0 62.9 1.0
CG B:ASP58 3.0 83.3 1.0
OD2 B:ASP58 3.3 78.4 1.0
OE2 F:GLU4 3.5 0.7 1.0
HZ3 C:LYS146 3.6 75.5 1.0
HE3 C:LYS146 3.7 0.3 1.0
HB3 G:LEU5 3.8 86.7 1.0
CE C:LYS146 4.0 90.2 1.0
HB3 G:GLU3 4.1 0.8 1.0
HB2 G:LEU5 4.1 86.7 1.0
HD23 G:LEU5 4.2 97.2 1.0
CB B:ASP58 4.4 70.9 1.0
CB G:LEU5 4.4 72.3 1.0
CD F:GLU4 4.5 0.9 1.0
HE21 C:GLN38 4.5 93.8 1.0
HB2 B:ASP58 4.5 85.1 1.0
HE2 C:LYS146 4.5 0.3 1.0
HA G:GLU3 4.6 0.7 1.0
OE1 F:GLU4 4.6 0.6 1.0
H G:LEU5 4.7 86.0 1.0
HB3 B:ASP58 4.7 85.1 1.0
HD22 G:LEU5 4.8 97.2 1.0
HD2 G:PRO4 4.8 0.3 1.0
CD2 G:LEU5 4.9 81.0 1.0
HD2 C:LYS146 4.9 74.4 1.0
HZ2 A:TRP88 4.9 75.3 1.0
HG2 G:PRO4 4.9 0.6 1.0
CB G:GLU3 5.0 90.6 1.0

Reference:

S.S.Hasan, E.Yamashita, D.Baniulis, W.A.Cramer. Quinone-Dependent Proton Transfer Pathways in the Photosynthetic Cytochrome B6F Complex Proc.Natl.Acad.Sci.Usa V. 110 4297 2013.
ISSN: ISSN 0027-8424
PubMed: 23440205
DOI: 10.1073/PNAS.1222248110
Page generated: Sat Dec 12 08:24:40 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy