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Cadmium in PDB 4ja4: Inward Open Conformation of the Xylose Transporter Xyle From E. Coli

Protein crystallography data

The structure of Inward Open Conformation of the Xylose Transporter Xyle From E. Coli, PDB code: 4ja4 was solved by E.M.Quistgaard, C.Low, P.Moberg, L.Tresaugues, P.Nordlund, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.18 / 4.20
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 125.820, 125.820, 380.680, 90.00, 90.00, 120.00
R / Rfree (%) 28.8 / 31.8

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Inward Open Conformation of the Xylose Transporter Xyle From E. Coli (pdb code 4ja4). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Inward Open Conformation of the Xylose Transporter Xyle From E. Coli, PDB code: 4ja4:

Cadmium binding site 1 out of 1 in 4ja4

Go back to Cadmium Binding Sites List in 4ja4
Cadmium binding site 1 out of 1 in the Inward Open Conformation of the Xylose Transporter Xyle From E. Coli


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Inward Open Conformation of the Xylose Transporter Xyle From E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd501

b:0.9
occ:1.00
NE2 B:HIS262 2.5 1.0 1.0
NE2 C:HIS262 2.5 0.5 1.0
NE2 A:HIS262 2.5 0.3 1.0
NE2 A:HIS258 2.5 0.6 1.0
NE2 C:HIS258 2.5 0.8 1.0
NE2 B:HIS258 2.5 0.2 1.0
CE1 B:HIS262 2.9 0.5 1.0
CE1 C:HIS262 2.9 0.4 1.0
CD2 A:HIS262 3.0 0.8 1.0
CE1 A:HIS262 3.0 0.2 1.0
CD2 C:HIS262 3.0 0.5 1.0
CD2 B:HIS262 3.1 0.9 1.0
CE1 B:HIS258 3.2 0.3 1.0
CE1 A:HIS258 3.2 0.2 1.0
CE1 C:HIS258 3.2 0.1 1.0
ND1 C:HIS262 3.6 0.9 1.0
ND1 A:HIS262 3.6 0.1 1.0
CG A:HIS262 3.6 0.5 1.0
CG C:HIS262 3.6 0.4 1.0
ND1 B:HIS262 3.6 0.2 1.0
CD2 A:HIS258 3.7 0.4 1.0
CD2 C:HIS258 3.7 0.6 1.0
CG B:HIS262 3.7 0.3 1.0
CD2 B:HIS258 3.7 0.9 1.0
ND1 B:HIS258 4.4 0.4 1.0
ND1 A:HIS258 4.4 0.2 1.0
ND1 C:HIS258 4.4 0.1 1.0
CG A:HIS258 4.7 0.0 1.0
CG C:HIS258 4.7 0.7 1.0
CG B:HIS258 4.7 0.8 1.0
CB A:HIS262 4.8 0.8 1.0
CB C:HIS262 4.8 0.4 1.0
CB B:HIS262 4.9 0.6 1.0

Reference:

E.M.Quistgaard, C.Low, P.Moberg, L.Tresaugues, P.Nordlund. Structural Basis For Substrate Transport in the Glut-Homology Family of Monosaccharide Transporters. Nat.Struct.Mol.Biol. V. 20 766 2013.
ISSN: ISSN 1545-9993
PubMed: 23624861
DOI: 10.1038/NSMB.2569
Page generated: Sat Dec 12 08:24:55 2020

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