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Cadmium in PDB 4kaw: Crystal Structure of Ribosome Recycling Factor Mutant R39G From Mycobacterium Tuberculosis

Protein crystallography data

The structure of Crystal Structure of Ribosome Recycling Factor Mutant R39G From Mycobacterium Tuberculosis, PDB code: 4kaw was solved by M.Selvaraj, A.Govindan, A.Seshadri, B.Dubey, U.Varshney, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.61 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.360, 33.590, 60.890, 90.00, 112.84, 90.00
R / Rfree (%) 23.5 / 27.4

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Ribosome Recycling Factor Mutant R39G From Mycobacterium Tuberculosis (pdb code 4kaw). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Ribosome Recycling Factor Mutant R39G From Mycobacterium Tuberculosis, PDB code: 4kaw:

Cadmium binding site 1 out of 1 in 4kaw

Go back to Cadmium Binding Sites List in 4kaw
Cadmium binding site 1 out of 1 in the Crystal Structure of Ribosome Recycling Factor Mutant R39G From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Ribosome Recycling Factor Mutant R39G From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cd201

b:21.7
occ:1.00
OE1 X:GLU14 2.2 31.8 1.0
OE2 X:GLU10 2.3 32.2 1.0
O X:HOH319 2.7 22.8 1.0
CD X:GLU14 3.2 30.1 1.0
CD X:GLU10 3.4 29.6 1.0
OE2 X:GLU14 3.6 30.2 1.0
CG X:GLU10 3.8 27.3 1.0
OH X:TYR167 3.8 38.4 1.0
OE1 X:GLU10 4.5 29.3 1.0
CG X:GLU14 4.5 28.8 1.0

Reference:

M.Selvaraj, A.Govindan, A.Seshadri, B.Dubey, U.Varshney, M.Vijayan. Molecular Flexibility of Mycobacterium Tuberculosis Ribosome Recycling Factor and Its Functional Consequences: An Exploration Involving Mutants. J.Biosci. V. 38 845 2013.
ISSN: ISSN 0250-4774
PubMed: 24296887
Page generated: Sat Dec 12 08:25:00 2020

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