Cadmium in PDB 4kc6: Crystal Structure of C-Terminal Deletion Mutant of Ribosome Recycling Factor From Mycobacterium Tuberculosis

The structure of Crystal Structure of C-Terminal Deletion Mutant of Ribosome Recycling Factor From Mycobacterium Tuberculosis, PDB code: 4kc6 was solved by M.Selvaraj, A.Govindan, A.Seshadri, B.Dubey, U.Varshney, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.21 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.990, 48.790, 84.140, 90.00, 90.00, 90.00
R / Rfree (%)	25.1 / 30.4

The binding sites of Cadmium atom in the Crystal Structure of C-Terminal Deletion Mutant of Ribosome Recycling Factor From Mycobacterium Tuberculosis (pdb code 4kc6). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Crystal Structure of C-Terminal Deletion Mutant of Ribosome Recycling Factor From Mycobacterium Tuberculosis, PDB code: 4kc6:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Crystal Structure of C-Terminal Deletion Mutant of Ribosome Recycling Factor From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of C-Terminal Deletion Mutant of Ribosome Recycling Factor From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:59.7 occ:1.00 OE2 A:GLU4 2.3 67.4 1.0 CD A:GLU4 3.1 63.2 1.0 OE1 A:GLU4 3.2 65.2 1.0 OD1 A:ASP8 3.4 71.8 1.0 CG A:ASP8 4.1 65.7 1.0 CB A:ASP8 4.3 58.0 1.0 CG A:GLU4 4.4 59.1 1.0 O A:HOH405 4.5 54.1 1.0 O A:GLU4 4.8 39.1 1.0 CA A:ASP8 5.0 45.0 1.0

Cadmium binding site 2 out of 2 in the Crystal Structure of C-Terminal Deletion Mutant of Ribosome Recycling Factor From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of C-Terminal Deletion Mutant of Ribosome Recycling Factor From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:62.3 occ:1.00 NE2 A:HIS140 2.5 50.5 1.0 OE2 A:GLU157 2.7 47.3 1.0 CD A:GLU157 3.2 45.1 1.0 CE1 A:HIS140 3.3 50.3 1.0 OE1 A:GLU157 3.3 46.3 1.0 CD2 A:HIS140 3.3 48.5 1.0 SD A:MET136 3.4 51.6 1.0 CG A:MET136 4.0 49.0 1.0 ND1 A:HIS140 4.2 48.1 1.0 CG A:HIS140 4.3 46.3 1.0 CG A:GLU157 4.5 43.2 1.0 CE A:MET136 4.5 52.1 1.0 NH2 A:ARG143 4.6 50.5 1.0 NH1 A:ARG143 4.8 52.1 1.0 NH1 A:ARG133 4.9 73.2 1.0 CB A:GLU157 4.9 41.5 1.0

M.Selvaraj, A.Govindan, A.Seshadri, B.Dubey, U.Varshney, M.Vijayan. Molecular Flexibility of Mycobacterium Tuberculosis Ribosome Recycling Factor and Its Functional Consequences: An Exploration Involving Mutants. J.Biosci. V. 38 845 2013.
ISSN: ISSN 0250-4774
PubMed: 24296887